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confettiRbasic_build_failure.r

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    Authored by Dirk Sarpe
    confettiRbasic_build_failure.r 3.37 KiB
    > library(devtools)
    > install_github("FelixMay/confettiRbasic")
    Downloading GitHub repo FelixMay/confettiRbasic@master
    from URL https://api.github.com/repos/FelixMay/confettiRbasic/zipball/master
    Installing confettiRbasic
    '/usr/lib/R/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet  \
      CMD INSTALL  \
      '/tmp/RtmpNS5Rqk/devtools1c7f887015a/FelixMay-confettiRbasic-ff5f234'  \
      --library='/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3'  \
      --install-tests 
    
    * installing *source* package 'confettiRbasic' ...
    ** libs
    g++ -std=c++11 -I/usr/share/R/include -DNDEBUG   -I"/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include"   -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c CallConfetti.cpp -o CallConfetti.o
    g++ -std=c++11 -I/usr/share/R/include -DNDEBUG   -I"/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include"   -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c Forest.cpp -o Forest.o
    g++ -std=c++11 -I/usr/share/R/include -DNDEBUG   -I"/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include"   -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c ParaSettings.cpp -o ParaSettings.o
    g++ -std=c++11 -I/usr/share/R/include -DNDEBUG   -I"/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include"   -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
    g++ -std=c++11 -I/usr/share/R/include -DNDEBUG   -I"/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include"   -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c mersenne.cpp -o mersenne.o
    g++ -std=c++11 -I/usr/share/R/include -DNDEBUG   -I"/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include"   -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c stoc1.cpp -o stoc1.o
    g++ -std=c++11 -I/usr/share/R/include -DNDEBUG   -I"/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include"   -fpic  -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c userintf.cpp -o userintf.o
    g++ -std=c++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o confettiRbasic.so CallConfetti.o Forest.o ParaSettings.o RcppExports.o mersenne.o stoc1.o userintf.o -L/usr/lib/R/lib -lR
    installing to /homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/confettiRbasic/libs
    ** R
    ** preparing package for lazy loading
    ** help
    Warning: /tmp/RtmpNS5Rqk/devtools1c7f887015a/FelixMay-confettiRbasic-ff5f234/man/confetti.run.Rd:32: unexpected TEXT ' ', expecting '{'
    *** installing help indices
    ** building package indices
    ** installing vignettes
    ** testing if installed package can be loaded
    Error in dyn.load(file, DLLpath = DLLpath, ...) : 
      unable to load shared object '/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/confettiRbasic/libs/confettiRbasic.so':
      /homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/confettiRbasic/libs/confettiRbasic.so: undefined symbol: _ZN7CForest6MaxSADE
    Error: loading failed
    Execution halted
    ERROR: loading failed
    * removing '/homes/ds88bifa/R/x86_64-pc-linux-gnu-library/3.3/confettiRbasic'
    Error: Command failed (1)
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