diff --git a/Projects/CSA/ExperimentalDesign.R b/Projects/CSA/ExperimentalDesign.R index 2ff47e827fe18a375b21066de656a990a09c48f7..8f40a98e20cd6df47e520bffb5eb9d641c646889 100644 --- a/Projects/CSA/ExperimentalDesign.R +++ b/Projects/CSA/ExperimentalDesign.R @@ -39,3 +39,4 @@ summary(design) saveRDS(design$design, "Projects/CSA/Designs/design1.RDS") +write.csv2(design$design, "Projects/CSA/Designs/design1.csv") diff --git a/functions.R b/functions.R index 231ffb5ab71f1db0053efcb318bcfa8ff885adfb..2092551891864a1d1e8065e959551eddba42d963 100644 --- a/functions.R +++ b/functions.R @@ -1,6 +1,22 @@ +make_md <- function(f=file){ + + + + + rmarkdown::render("simulation_output.rmd", + output_file = paste0( + stringr::str_remove_all( + file,"parameters_|.R$"),".html"), + params = list(file=file) + ) + +} + sim_all <- function(){ + require("stringr") + designfile<-list.files(designpath,full.names = T) designname <- str_remove_all(list.files(designpath,full.names = F), "(.ngd|_|.RDS)") ## Make sure designnames to not contain file ending and "_", as the may cause issues when replace diff --git a/generatemd.R b/generatemd.R index 36f349f738701b9e116878a34869c18403196479..d3d9b3a1244fdbcbb542bbd291175d17ca1628c3 100644 --- a/generatemd.R +++ b/generatemd.R @@ -1,16 +1,11 @@ rm(list=ls()) +source("functions.R") + file <- "Projects/feedadditives/parameters_feedadd.R" # file <- "Projects/CSA/parameters_csa.R" -rmarkdown::render("simulation_output.rmd", - output_file = paste0( - stringr::str_remove_all( - file,"parameters_|.R$"),".html"), - params = list(file=file) - ) - - +make_md() \ No newline at end of file