diff --git a/src/pipeline/submit_pipeline_model.sh b/src/pipeline/submit_pipeline_model.sh index 2bf92d1bd394d3c549ba24e13a73e5ffcaa083a6..a861045e9c28d2e4a5eefb6ff22e7301f5412b31 100644 --- a/src/pipeline/submit_pipeline_model.sh +++ b/src/pipeline/submit_pipeline_model.sh @@ -6,12 +6,13 @@ # here somehow write the prefix depending on what we are testing -JOB_NAME_PREFIX=ppln_ae75m_50 +JOB_NAME_PREFIX=ppln_ae75m_50_ac -INPUT_PATH='/work/voigtma/ppln_ae75m_50-2017-02-14T16-39-11' +INPUT_PATH='/work/voigtma/ppln_ae75m_50_fixing-2017-02-28T18-00-52' NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S) -OUTPUT_PATH=$INPUT_PATH +# FIX THIS +OUTPUT_PATH=/work/$USER/$NAME # qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different) QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" @@ -24,7 +25,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" MODEL_JOB_ID_FITTING=$($QSUB \ -N ${JOB_NAME_PREFIX}_fitting \ - $HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model.sh \ + $HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model_ac_term.sh \ -i $INPUT_PATH \ --ESW-aerial 0.075 \ --include-aerial \