From 6bf574121586d04e01086bce8195b35b9c3361d3 Mon Sep 17 00:00:00 2001
From: Maria Voigt <maria.voigt@idiv.de>
Date: Wed, 1 Mar 2017 18:28:06 +0100
Subject: [PATCH] changing outdir and submit to ac-model
---
src/pipeline/submit_pipeline_model.sh | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/src/pipeline/submit_pipeline_model.sh b/src/pipeline/submit_pipeline_model.sh
index 2bf92d1..a861045 100644
--- a/src/pipeline/submit_pipeline_model.sh
+++ b/src/pipeline/submit_pipeline_model.sh
@@ -6,12 +6,13 @@
# here somehow write the prefix depending on what we are testing
-JOB_NAME_PREFIX=ppln_ae75m_50
+JOB_NAME_PREFIX=ppln_ae75m_50_ac
-INPUT_PATH='/work/voigtma/ppln_ae75m_50-2017-02-14T16-39-11'
+INPUT_PATH='/work/voigtma/ppln_ae75m_50_fixing-2017-02-28T18-00-52'
NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S)
-OUTPUT_PATH=$INPUT_PATH
+# FIX THIS
+OUTPUT_PATH=/work/$USER/$NAME
# qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different)
QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
@@ -24,7 +25,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
MODEL_JOB_ID_FITTING=$($QSUB \
-N ${JOB_NAME_PREFIX}_fitting \
- $HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model.sh \
+ $HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model_ac_term.sh \
-i $INPUT_PATH \
--ESW-aerial 0.075 \
--include-aerial \
--
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