diff --git a/src/pipeline/submit_pipeline_model.sh b/src/pipeline/submit_pipeline_model.sh index 454f458d0be7bd68ac4f9fbeb975b04597905818..c16912cad5d1786cce3b70d030e3485edaa7162e 100644 --- a/src/pipeline/submit_pipeline_model.sh +++ b/src/pipeline/submit_pipeline_model.sh @@ -6,12 +6,12 @@ # here somehow write the prefix depending on what we are testing -JOB_NAME_PREFIX=ppln_noa_50_ac +JOB_NAME_PREFIX=ppln_ae75m_50_ac -INPUT_PATH='/work/voigtma/ppln_noae_50_ac-2017-02-09T18-31-21' +INPUT_PATH='/work/voigtma/ppln_ae75m_50_ac-2017-02-15T14-23-58' NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S) -OUTPUT_PATH=/work/$USER/$NAME +OUTPUT_PATH=$INPUT_PATH # qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different) QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" @@ -27,6 +27,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" $HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model_ac_term.sh \ -i $INPUT_PATH \ --ESW-aerial 0.075 \ + --include-aerial \ --stability) @@ -36,6 +37,5 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" -hold_jid $MODEL_JOB_ID_FITTING \ -t 1999:2015 \ $HOME/orangutan_density_distribution/src/prediction/submit_abundance_pred.sh \ - -i $OUTPUT_PATH \ - -q) + -i $OUTPUT_PATH )