#!/bin/bash # ------------------------------------------------------------------------------ # config # ------------------------------------------------------------------------------ # here somehow write the prefix depending on what we are testing JOB_NAME_PREFIX=ppln_ae10m_50 INPUT_PATH='/work/voigtma/ppln_ae_50_new-2017-02-07T13-46-33' NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S) OUTPUT_PATH=/work/$USER/$NAME # qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different) QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" # ------------------------------------------------------------------------------ # model-fitting & prediction # ------------------------------------------------------------------------------ MODEL_JOB_ID_FITTING=$($QSUB \ -N ${JOB_NAME_PREFIX}_fitting \ $HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model.sh \ -i $INPUT_PATH \ --ESW-aerial 0.025 \ --stability \ --include-aerial) # prediction submitten MODEL_JOB_ID_PRED=$($QSUB \ -N ${JOB_NAME_PREFIX}_prediction \ -hold_jid $MODEL_JOB_ID_FITTING \ -t 1999:2015 \ $HOME/orangutan_density_distribution/src/prediction/submit_abundance_pred.sh \ -i $OUTPUT_PATH \ --predictor-input-directory $INPUT_PATH \ -q)