From 9f4a9c777256d559050218f2a4e156fa70c8b31f Mon Sep 17 00:00:00 2001
From: Daniel Vedder <daniel.vedder@idiv.de>
Date: Fri, 27 Oct 2023 09:37:27 +0200
Subject: [PATCH] Updated README
---
README.md | 10 ++++++----
src/analysis/makieplots.jl | 6 ++++--
2 files changed, 10 insertions(+), 6 deletions(-)
diff --git a/README.md b/README.md
index 21832d0..a43426c 100644
--- a/README.md
+++ b/README.md
@@ -1,10 +1,12 @@
# Persefone.jl
+
+
**A multidisciplinary mechanistic model of agricultural landscapes and ecosystems in Europe.**
## Description
-[Persefone.jl](https://git.idiv.de/persefone/persefone-model) models agricultural practice and
+[Persefone.jl](https://persefone-model.eu/) models agricultural practice and
how it impacts animal species at a landscape scale. It includes a farm submodel, a crop
growth submodel, and individual-based models of multiple indicator species. Its aim is to
investigate how changes in farm operations (e.g. through policy changes in the CAP)
@@ -15,8 +17,8 @@ framework. It is currently in the early stages of development.
## Usage
-*For the full documentation, open `docs/documentation.html` in a browser, or visit
-[https://persefone-model.eu/documentation](https://persefone-model.eu/documentation).*
+*For the full documentation, or visit the [website](https://persefone-model.eu/documentation).
+To use Persefone.jl with a graphical user interface, see [here](https://git.idiv.de/persefone/persefone-desktop).*
### Installation
@@ -26,7 +28,7 @@ language (1.9+). The recommended editors are [VSCode](https://www.julia-vscode.o
To install package dependencies, open a Julia REPL in this folder and run
`using Pkg; Pkg.activate("."); Pkg.instantiate()`.
-### Running from the commandline
+### Running from the command line
This is the normal mode of operation. Simply execute `run.jl` in a terminal, typically like
so (in Linux):
diff --git a/src/analysis/makieplots.jl b/src/analysis/makieplots.jl
index 1167b0d..6a6ef45 100644
--- a/src/analysis/makieplots.jl
+++ b/src/analysis/makieplots.jl
@@ -28,6 +28,8 @@ function visualisemap(model::AgentBasedModel,date=nothing,landcover=nothing)
return f
end
isnothing(date) && (date = inds.Date[end])
+ #XXX other colour schemes: :tab10, :Accent_8, :Dark2_8, :Paired_12, :Set1_9
+ # https://juliagraphics.github.io/ColorSchemes.jl/stable/catalogue/
update_theme!(palette=(color=cgrad(:seaborn_bright,
length(@param(nature.targetspecies))),),
cycle=[:color])
@@ -51,8 +53,8 @@ Returns a Makie figure object.
"""
function populationtrends(model::AgentBasedModel)
pops = model.datatables["populations"]
- # create the labels needed for the ticks on the X axis
- update_theme!(palette=(color=cgrad(:seaborn_bright, length(unique(pops.Species))),),
+ update_theme!(palette=(color=cgrad(:seaborn_bright,
+ length(@param(nature.targetspecies))),),
cycle=[:color])
f = Figure()
dates = @param(core.startdate):@param(core.enddate)
--
GitLab