diff --git a/docs/notebook-almass-vegetation.jl b/docs/notebook-almass-vegetation.jl
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+### A Pluto.jl notebook ###
+# v0.19.45
+
+using Markdown
+using InteractiveUtils
+
+# ╔═╡ 1ce4cf02-4d80-11ef-0759-99876c2c9002
+begin
+	using PlutoUI, Unitful, Plots
+	using Unitful: MJ, m, d
+	TableOfContents()
+end
+
+# ╔═╡ 26ad42b4-ec55-4c43-b45a-59fe99e8a067
+md"""
+# ALMaSS vegetation model
+
+Based on the information in ALMaSSVegetationModelling.pdf (https://git.idiv.de/persefone/persefone-model/-/blob/master/docs/ALMaSSVegetationModelling.pdf).
+"""
+
+# ╔═╡ eef634af-2157-4f6d-96de-d01ebb3a80a2
+md"""
+## TODO
+
+- calculation of LAI-green from temperature (using growth curves and GDD)
+  - at the moment daily avg temperature has no effect on LAI-green and hence no 
+    effect on accumulated dry matter
+
+"""
+
+# ╔═╡ 6e2001c5-69cc-4830-8426-a35990c1a03d
+md"""
+## Open questions
+
+- meaning of: radiation vs normal radiation?
+- units of incoming daily radiation? maybe: MJ/m^2/day
+"""
+
+# ╔═╡ 01331c5a-00bd-4504-85ac-d7aec1a0c14d
+md"""
+
+## Variables used in the model
+
+- `ε`: radiation use efficiency (g/MJ)
+- `ϕ`: fraction of incoming light intercepted by crop canopy (0 to 1, no units)
+  - `ϕ(LAI_green(d))`, where `LAI_green(d)` is the green leaf area index (m^2/m^2)
+- `f(T)`: effect of temperature `T` (K or °C) on dry matter growth (no units)
+- `R(d)`: incoming global radiation (MJ/m^2)
+- `p(d)`: effect of fertiliser (no units)
+
+- `LAI_green(d)` is taken from empirical curves, taking into account `gdd`,  
+  `LAI_total` also includes dead leaves
+-  `gdd`: growing-degree-days (unit "K days"),
+  - `gdd(n)=sum(max(0, (max_or_avg_temp(d) - min_growth_temp) for d = 1:n)`
+
+"""
+
+# ╔═╡ f3e009e2-c565-41dc-b35d-096400e867c3
+md"""
+## Accumulated dry matter: W
+"""
+
+# ╔═╡ 6534f518-9465-4bd2-9f74-51a12bdc412f
+md"""
+## Growing-degree days: GDD
+"""
+
+# ╔═╡ 1488ab39-d9f7-48a6-a22c-8ad4a90e17f5
+"""
+	gdd(n): growing-degree days (d K, day Kelvin)
+"""
+function gdd(n::Integer;
+             avg_daily_temperature = d -> 14.0u"°C",
+             min_growth_temperature = 10.0u"°C")
+	# TODO: check if formula is correct
+	g = sum(max(0.0u"K", avg_daily_temperature(d) - min_growth_temperature)
+	        for d = 1:n)
+	return g * 1.0u"d"
+end
+
+# ╔═╡ c489e5c3-24b1-48c8-b587-7e75154722ef
+let
+	x = range(1, 15)
+	# artificial avg daily temperature data
+	avgT = (0.5 * sin.(x).^2 .+ 9.8) * u"°C"
+	min_growth_temperature = 10.0u"°C"
+	y_gdd = ustrip.(gdd.(x; avg_daily_temperature = d -> avgT[d]))
+	y_avgT = ustrip.(avgT)
+	y_minT = [ustrip(min_growth_temperature) for _ in eachindex(x)]
+	p1 = plot(x, y_gdd;
+	          title="Growing-degree days (GDD)",
+	     	  label="GDD (day K)",
+	     	  xlabel="Day number",
+			  xticks=x,
+			  ylabel="Growing-degree days (day K)",
+			  color=:green,
+			  legend=:topleft,
+			  marker=:circle)
+	plot!(twinx(), x, [y_minT y_avgT];
+	      label=["Min growth temperature" "Daily avg temperature"],
+	      ylabel="Daily average temperature (°C)",
+	      legend=:topright,
+		  marker=[:none :circle])
+end
+
+# ╔═╡ 38158dbc-a702-4c86-8cda-6e08c631a22a
+md"""
+## Fraction of intercepted light: ϕ
+"""
+
+# ╔═╡ 5800ddc2-4fcb-452b-901f-7eb510aea4f5
+"""
+	ϕ(LAI_green): fraction of intercepted light (no units, 0 to 1)
+
+Arguments:
+ - `LAI_green`: leaf area index of green leaves (green leaf cover m^2 / ground area m^2)
+"""
+function ϕ(LAI_green)
+	"""
+        k: extinction coefficient (no units), set to k = 0.4 in general
+	"""
+	k = 0.4u"m^2/m^2"
+
+	1 - exp(-k * LAI_green)
+end
+
+# ╔═╡ 41411efa-5ff7-4e79-b6ee-d932b506758c
+let
+	x = range(0, 10, length=100)
+	y = ϕ.(x)
+	plot(x, y;
+		 title="Fraction of light intercepted by green leaves",
+	     label="fraction of intercepted light ϕ",
+	     xlabel="LAI-Green, green leaf area index (leaf cover m^2 / area m^2)",
+		 ylabel="Fraction intercepted light (no units)")
+end
+
+# ╔═╡ 1bef060e-f0cc-4359-941b-9b1e06895fd7
+md"""
+## Incoming daily solar radiation: R
+"""
+
+# ╔═╡ 551ee825-d63c-420c-980c-2d1bbf12dec0
+"""
+	R_Odum(d): normal daily global radiation (MJ m^-2) in Ødum, Denmark
+
+Arguments:
+- `d`: day of the year (1 to 365, no units)
+"""
+function R_Odum(d::Real)
+	# Fourier series approx. for Ødum, Denmark
+	ω = 2π / 365
+	b₀ = 9.478
+	b₁ = -9.221
+	b₂ = 1.458
+	b₃ = 0.653
+	b₄ = -0.421
+
+	return (b₀
+			+ b₁ * cos(ω * d)
+			+ b₂ * sin(ω * d)
+			+ b₃ * cos(2 * ω * d)
+			+ b₄ * sin(2 * ω * d)) * u"MJ/m^2"
+end
+
+# ╔═╡ 5dbf2aac-0cf0-4a15-b1cb-d804eed52a4f
+"""
+	W(n): accumulated dry matter at day `n` (g/m^2)
+
+	W(n :: Integer;
+	  biomass_per_light_energy :: Real,                           # (g/MJ)
+      daily_avg_temperature :: Function{d::Int -> T(d)::Real},    # (°C)
+      LAI_green :: Function{d::Int -> L(d)::Real},                # (no unit)
+      temperature_scaling :: Function{T -> f(T)},                 # (no unit)
+      fertiliser_scaling :: Function{d -> p(d)},                  # (no unit)
+      incoming_radiation :: Function{d -> R(d)})                  # (MJ/m^2)
+
+Formula used:
+	`W(n) = sum(ε * ϕ(L(d)) * f(T(d)) * R(d) * p(d) for d = 1:n)`
+
+Arguments
+- `biomass_per_light_energy`, `ε`
+- `daily_avg_temperature`, `T(d)`
+- `LAI_green`, `L(d)`
+- `temperature_scaling`, `f(T)`
+- `fertiliser_scaling`, `p(d)`
+
+Formula from pdf:
+	`W(n) = sum(ε * ϕ * f(T) * R(d) for d = 1:n)`
+"""
+function W(n::Integer;
+           biomass_per_light_energy = 1.4u"g/MJ",  # ε
+           daily_avg_temperature = d -> 15u"°C",   # T(d)
+		   LAI_green = d -> 5.0u"m^2/m^2",         # L(d)
+		   temperature_scaling = T -> 1.0,         # f(T)
+		   fertiliser_scaling = d -> 1.0,          # p(d)
+		   incoming_radiation = R_Odum)            # R(d)
+	ε = biomass_per_light_energy
+	T = daily_avg_temperature
+	L = LAI_green
+	f = temperature_scaling
+	p = fertiliser_scaling
+	R = incoming_radiation
+	sum(ε *	ϕ(L(d))	* f(T(d)) * R(d) * p(d) for d = 1:n)
+end
+
+# ╔═╡ 3d3fba49-beb0-4521-b787-b3a5455796e0
+# ╠═╡ disabled = true
+#=╠═╡
+let
+	x = range(1, 365, length=365)
+
+	# artificial data for daily avg temperature
+	T(d) = (cos(d * 2π/365 + 0.9π) .* 8 .+ 10) * u"°C"
+	yT = ustrip.(T.(x))
+
+	function L(d)
+		# TODO: assumes 1 <= d <= 365
+		L_start = 0.01
+		L_level = 8.0
+		L_end = 0.01
+		d_rampup = 75
+		d_level = 150
+		d_rampdown = 220
+		d_end = 250
+		return if 0 <= d < d_rampup
+			L_start
+		elseif d_rampup <= d < d_level
+			L_start + (d - d_rampup) * (L_level - L_start) / (d_level - d_rampup)
+		elseif d_level <= d < d_rampdown
+			L_start + L_level
+		elseif d_rampdown <= d < d_end
+			L_start + L_level - (d - d_rampdown) * (L_level - L_end) / (d_end - d_rampdown)
+		elseif d_end <= d <= 365
+			return L_end
+		else
+			error("Illegal day $d, has to be 0 <= d <= 365")
+		end * u"m^2/m^2"
+	end
+	yL = L.(x)
+
+	y = W.(Int.(x);
+		   daily_avg_temperature = T,
+		   incoming_radiation = R_Odum,
+	    )
+	p1 = plot(x, y;
+		 	  title="Accumulated dry matter: W",
+		 	  label="Dry matter in g / m^2",
+		 	  xlabel="Day of the year (1 to 365)",
+		      ylabel="Accumulated dry matter"
+	)
+	p1 = plot!(twinx(), yT;
+			   label="Daily avg temp (°C)",
+		  	   color="red",
+		  	   ylabel="Daily avg temperature (°C)",
+	)
+	p2 = plot(x, yL;
+	          title = "Green leaf area index (LAI-green)",
+	          label = "LAI-green",
+			  xlabel="Day of the year (1 to 365)",
+		      ylabel="LAI-green",
+		      #marker = :circle,
+	)
+	plot(p1, p2; layout=(2,1), size=(600,600))
+end
+  ╠═╡ =#
+
+# ╔═╡ 08624eb0-465b-411d-9706-104382aef0ff
+let
+	x = range(1, 365, length=365)
+	y = R_Odum.(x)
+	plot(x, y;
+		 title="Fourier series approximation to\n" *
+		       "incoming daily radiation in Ødum, Denmark",
+		 label="R: radiation in MJ m^-2",
+		 xlabel="Day of the year (1 to 365)",
+		 ylabel="Incoming daily radiation")
+end
+
+# ╔═╡ 2cf7ef76-1f47-48b0-9d85-0f967d15d537
+
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+
+[[deps.Zlib_jll]]
+deps = ["Libdl"]
+uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
+version = "1.2.13+1"
+
+[[deps.Zstd_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b"
+uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
+version = "1.5.6+0"
+
+[[deps.eudev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]
+git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba"
+uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06"
+version = "3.2.9+0"
+
+[[deps.fzf_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8"
+uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
+version = "0.43.0+0"
+
+[[deps.gperf_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033"
+uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70"
+version = "3.1.1+0"
+
+[[deps.libaom_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d"
+uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b"
+version = "3.9.0+0"
+
+[[deps.libass_jll]]
+deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
+git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47"
+uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0"
+version = "0.15.1+0"
+
+[[deps.libblastrampoline_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
+version = "5.8.0+1"
+
+[[deps.libdecor_jll]]
+deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"]
+git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f"
+uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f"
+version = "0.2.2+0"
+
+[[deps.libevdev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22"
+uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc"
+version = "1.11.0+0"
+
+[[deps.libfdk_aac_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55"
+uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
+version = "2.0.2+0"
+
+[[deps.libinput_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"]
+git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce"
+uuid = "36db933b-70db-51c0-b978-0f229ee0e533"
+version = "1.18.0+0"
+
+[[deps.libpng_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
+git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4"
+uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
+version = "1.6.43+1"
+
+[[deps.libvorbis_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
+git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3"
+uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
+version = "1.3.7+2"
+
+[[deps.mtdev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11"
+uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e"
+version = "1.1.6+0"
+
+[[deps.nghttp2_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
+version = "1.52.0+1"
+
+[[deps.p7zip_jll]]
+deps = ["Artifacts", "Libdl"]
+uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
+version = "17.4.0+2"
+
+[[deps.x264_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2"
+uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a"
+version = "2021.5.5+0"
+
+[[deps.x265_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9"
+uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76"
+version = "3.5.0+0"
+
+[[deps.xkbcommon_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"]
+git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37"
+uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
+version = "1.4.1+1"
+"""
+
+# ╔═╡ Cell order:
+# ╟─26ad42b4-ec55-4c43-b45a-59fe99e8a067
+# ╟─eef634af-2157-4f6d-96de-d01ebb3a80a2
+# ╟─6e2001c5-69cc-4830-8426-a35990c1a03d
+# ╟─01331c5a-00bd-4504-85ac-d7aec1a0c14d
+# ╠═1ce4cf02-4d80-11ef-0759-99876c2c9002
+# ╟─f3e009e2-c565-41dc-b35d-096400e867c3
+# ╠═5dbf2aac-0cf0-4a15-b1cb-d804eed52a4f
+# ╠═3d3fba49-beb0-4521-b787-b3a5455796e0
+# ╟─6534f518-9465-4bd2-9f74-51a12bdc412f
+# ╠═1488ab39-d9f7-48a6-a22c-8ad4a90e17f5
+# ╠═c489e5c3-24b1-48c8-b587-7e75154722ef
+# ╟─38158dbc-a702-4c86-8cda-6e08c631a22a
+# ╠═5800ddc2-4fcb-452b-901f-7eb510aea4f5
+# ╠═41411efa-5ff7-4e79-b6ee-d932b506758c
+# ╟─1bef060e-f0cc-4359-941b-9b1e06895fd7
+# ╠═551ee825-d63c-420c-980c-2d1bbf12dec0
+# ╠═08624eb0-465b-411d-9706-104382aef0ff
+# ╠═2cf7ef76-1f47-48b0-9d85-0f967d15d537
+# ╟─00000000-0000-0000-0000-000000000001
+# ╟─00000000-0000-0000-0000-000000000002