From 11e16fd28b2bcf699b144c3771831fa3cec37e56 Mon Sep 17 00:00:00 2001
From: Francesco Sabatini <francesco.sabatini@idiv.de>
Date: Fri, 20 Mar 2020 15:18:49 +0100
Subject: [PATCH] minor change
---
01b_MesobromionCluster.R | 2 +-
submit_01b.sh | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/01b_MesobromionCluster.R b/01b_MesobromionCluster.R
index 3b60cdb..7fef7c6 100644
--- a/01b_MesobromionCluster.R
+++ b/01b_MesobromionCluster.R
@@ -216,7 +216,7 @@ Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY
if(b==1) {cor.obs <- rbind(cor.obs, tmp)}
cor.bootstr[i,b] <- tmp$Coef
cor.perm[i,b] <- myfunction(comm=speciesb, trait=traitsb.perm, trait.sel=tt, stat="RV")$Coef
- print(paste("trait", tt, "perm", b))
+ print(paste("trait", paste0(tt, collapse="_"), "perm", b))
}
print(i)
}
diff --git a/submit_01b.sh b/submit_01b.sh
index 55cd087..b165c03 100644
--- a/submit_01b.sh
+++ b/submit_01b.sh
@@ -22,10 +22,10 @@ output=/data/splot/HIDDEN/output/HIDDEN
Rscript \
cli_01b.r \
- --max.inter.t 2 \
+ --max.inter.t 3 \
--chunk.i $SGE_TASK_ID \
--chunkn 399 \
- --nperm 99 \
+ --nperm 199 \
/data/splot/HIDDEN/species.out.10perc.txt \
/data/splot/HIDDEN/traits.out.10perc.txt \
"$output" \
--
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