diff --git a/01b_MesobromionCluster.R b/01b_MesobromionCluster.R index 8b1a9fa0d6d2014e6ce2b526f21c4d476db90759..f3e1bf7d0afebeb751ce95ee23e5729692dc284d 100644 --- a/01b_MesobromionCluster.R +++ b/01b_MesobromionCluster.R @@ -18,7 +18,8 @@ require(doParallel) source("99_HIDDEN_functions.R") -Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY.bootstr", max.inter.t, chunkn, chunk.i, nperm=199){ +Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY.bootstrap +", max.inter.t, chunkn, chunk.i, nperm=199){ myfunction <- get(myfunction) ## calculate corr between species composition matrix and traits diff --git a/submit_01b.sh b/submit_01b.sh index b165c0347cbaf6151e23bf494392dd110df9b668..8b002580b9f54800f13361d09a7ad7c4ee4c22d2 100644 --- a/submit_01b.sh +++ b/submit_01b.sh @@ -22,11 +22,11 @@ output=/data/splot/HIDDEN/output/HIDDEN Rscript \ cli_01b.r \ - --max.inter.t 3 \ + --max.inter.t 2 \ --chunk.i $SGE_TASK_ID \ - --chunkn 399 \ - --nperm 199 \ + --chunkn 300 \ + --nperm 999 \ /data/splot/HIDDEN/species.out.10perc.txt \ /data/splot/HIDDEN/traits.out.10perc.txt \ "$output" \ - "get.corXY" + "get.corXY.bootstrap"