From 1cd0f72e06bec1b542ad3f7e6f534e0532ab7b18 Mon Sep 17 00:00:00 2001
From: Francesco Sabatini <francesco.sabatini@idiv.de>
Date: Thu, 9 Apr 2020 13:51:20 +0200
Subject: [PATCH] minor fixes
---
01b_MesobromionCluster.R | 3 ++-
submit_01b.sh | 8 ++++----
2 files changed, 6 insertions(+), 5 deletions(-)
diff --git a/01b_MesobromionCluster.R b/01b_MesobromionCluster.R
index 8b1a9fa..f3e1bf7 100644
--- a/01b_MesobromionCluster.R
+++ b/01b_MesobromionCluster.R
@@ -18,7 +18,8 @@ require(doParallel)
source("99_HIDDEN_functions.R")
-Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY.bootstr", max.inter.t, chunkn, chunk.i, nperm=199){
+Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY.bootstrap
+", max.inter.t, chunkn, chunk.i, nperm=199){
myfunction <- get(myfunction)
## calculate corr between species composition matrix and traits
diff --git a/submit_01b.sh b/submit_01b.sh
index b165c03..8b00258 100644
--- a/submit_01b.sh
+++ b/submit_01b.sh
@@ -22,11 +22,11 @@ output=/data/splot/HIDDEN/output/HIDDEN
Rscript \
cli_01b.r \
- --max.inter.t 3 \
+ --max.inter.t 2 \
--chunk.i $SGE_TASK_ID \
- --chunkn 399 \
- --nperm 199 \
+ --chunkn 300 \
+ --nperm 999 \
/data/splot/HIDDEN/species.out.10perc.txt \
/data/splot/HIDDEN/traits.out.10perc.txt \
"$output" \
- "get.corXY"
+ "get.corXY.bootstrap"
--
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