diff --git a/submit_01b_array.sh b/submit_01b_array.sh index c99784079ed41908ea22fc7d75c59d7a54d08031..1f939c593435a9ab4fbc1163f072dda909e8b738 100644 --- a/submit_01b_array.sh +++ b/submit_01b_array.sh @@ -1,7 +1,7 @@ #!/bin/bash #$ -S /bin/bash -#$ -N HIDDENcov-nona +#$ -N HIDDENpa-nona2 #$ -o /work/$USER/$JOB_NAME-$JOB_ID-$TASK_ID.log #$ -j y @@ -19,20 +19,20 @@ module load GCC/8.3.0 module load OpenMPI/3.1.4 module load R/3.6.2 -output=/data/splot/HIDDEN/output/HIDDENcov.nona +output=/data/splot/HIDDEN/output/HIDDENpa-nona2 Rscript \ cli_01b.r \ - --max.inter.t 1 \ - --chunk.i $SGE_TASK_ID \ - --chunkn 53 \ - --nperm 99 \ - --ncores ${NSLOTS:-1} \ + --max.inter.t 11 \ + --chunk.i "$SGE_TASK_ID" \ + --chunkn 336 \ + --nperm 999 \ + --ncores "${NSLOTS:-1}" \ --start.round 1 \ - --relax.round 1 \ - --exclude.na T \ - /data/splot/HIDDEN/species.v2.10perc.cov.txt \ - /data/splot/HIDDEN/traits.v2.10perc.txt \ + --relax.round 8 \ + --exclude.na F \ + /data/splot/HIDDEN/species.v2.10perc.pa.txt \ + /data/splot/HIDDEN/traits.v2.10perc.pa.sign.txt \ "$output" \ "get.corXY.bootstrap" \ "all" \