diff --git a/01_Mesobromion.R b/01_Mesobromion.R index 796a0b2d787b3380a2a04cf4044cf688f0203a62..d6fd595e08f3ac6c76470e59bea1b4efa4003fa2 100644 --- a/01_Mesobromion.R +++ b/01_Mesobromion.R @@ -191,7 +191,7 @@ sign <- data.frame(Trait.comb=names(sign), sign=sign) corXY %>% arrange(Test, desc(Coef)) -aa <- data.frame(Trait.comb=paste0("t", 1:81), +aa <- data.frame(Trait.comb=paste0("t", 1:ncol(traits)), trait.name=colnames(traits))#[-which(colnames(traits) %in% c("species", "species0"))]) corXY.ci <- data.frame(Trait.comb=rownames(corXY.bootstr), @@ -264,7 +264,7 @@ traits.sign.alone <- mydata.SES %>% filter(ntraits==1) %>% filter(sign.SES==T) %>% pull(trait1) - + mydata <- mydata.SES %>% filter(ntraits==1)%>% mutate(seq=1:nrow(.)) @@ -291,6 +291,12 @@ ggplot(data=mydata) + + +traits.sign <- traits %>% + dplyr::select(traits.sign.alone) +write_csv(traits.sign, "_data/Mesobromion/traits.out.10perc.sign.txt") + + break() diff --git a/01b_MesobromionCluster.R b/01b_MesobromionCluster.R index 60d753469de80b178d5474c349768370650f02f5..720a14e60b8bd6e760e6e1b2e5cf14c0a09f4e06 100644 --- a/01b_MesobromionCluster.R +++ b/01b_MesobromionCluster.R @@ -18,7 +18,7 @@ require(doParallel) source("99_HIDDEN_functions.R") -Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY", max.inter.t, chunkn, chunk.i, nperm=199){ +Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY.bootstr", max.inter.t, chunkn, chunk.i, nperm=199){ myfunction <- get(myfunction) ## calculate corr between species composition matrix and traits