diff --git a/submit_01b_array.sh b/submit_01b_array.sh new file mode 100644 index 0000000000000000000000000000000000000000..1afb78f4e76e331ca93f0c153f45ac48adb2cd9b --- /dev/null +++ b/submit_01b_array.sh @@ -0,0 +1,38 @@ +#!/bin/bash + +#$ -S /bin/bash +#$ -N HIDDENcov-pa + +#$ -o /work/$USER/$JOB_NAME-$JOB_ID-$TASK_ID.log +#$ -j y + +#$ -l h_rt=00:30:00:00 +#$ -l h_vmem=2G + +#$ -pe smp 1-1 + +#$ -cwd + +#$ -t 1-1 + +module load GCC/8.3.0 +module load OpenMPI/3.1.4 +module load R/3.6.2 + +output=/data/splot/HIDDEN/output/HIDDENcov + +Rscript \ + cli_01b.r \ + --max.inter.t 1 \ + --chunk.i $SGE_TASK_ID \ + --chunkn 50 \ + --nperm 99 \ + --ncores ${NSLOTS:-1} \ + --start.round 1 \ + --relax.round 1 \ + /data/splot/HIDDEN/species.out.10perc.cov.txt \ + /data/splot/HIDDEN/traits.out.10perc.cov.txt \ + "$output" \ + "get.corXY.bootstrap" \ + "all" \ +