From 89f27f27f73c84d62345ffa9261024966efb713a Mon Sep 17 00:00:00 2001
From: Francesco Sabatini <francesco.sabatini@idiv.de>
Date: Mon, 17 Aug 2020 10:28:11 +0200
Subject: [PATCH] Added submit_01b_array.sh
---
submit_01b_array.sh | 38 ++++++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
create mode 100644 submit_01b_array.sh
diff --git a/submit_01b_array.sh b/submit_01b_array.sh
new file mode 100644
index 0000000..1afb78f
--- /dev/null
+++ b/submit_01b_array.sh
@@ -0,0 +1,38 @@
+#!/bin/bash
+
+#$ -S /bin/bash
+#$ -N HIDDENcov-pa
+
+#$ -o /work/$USER/$JOB_NAME-$JOB_ID-$TASK_ID.log
+#$ -j y
+
+#$ -l h_rt=00:30:00:00
+#$ -l h_vmem=2G
+
+#$ -pe smp 1-1
+
+#$ -cwd
+
+#$ -t 1-1
+
+module load GCC/8.3.0
+module load OpenMPI/3.1.4
+module load R/3.6.2
+
+output=/data/splot/HIDDEN/output/HIDDENcov
+
+Rscript \
+ cli_01b.r \
+ --max.inter.t 1 \
+ --chunk.i $SGE_TASK_ID \
+ --chunkn 50 \
+ --nperm 99 \
+ --ncores ${NSLOTS:-1} \
+ --start.round 1 \
+ --relax.round 1 \
+ /data/splot/HIDDEN/species.out.10perc.cov.txt \
+ /data/splot/HIDDEN/traits.out.10perc.cov.txt \
+ "$output" \
+ "get.corXY.bootstrap" \
+ "all" \
+
--
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