From db09f9198a2a8743123771a557bd24368d2f4b25 Mon Sep 17 00:00:00 2001
From: Francesco Sabatini <francesco.sabatini@idiv.de>
Date: Thu, 12 Nov 2020 14:43:50 +0100
Subject: [PATCH] Updated submit_01b_array.sh
---
submit_01b_array.sh | 22 +++++++++++-----------
1 file changed, 11 insertions(+), 11 deletions(-)
diff --git a/submit_01b_array.sh b/submit_01b_array.sh
index c997840..1f939c5 100644
--- a/submit_01b_array.sh
+++ b/submit_01b_array.sh
@@ -1,7 +1,7 @@
#!/bin/bash
#$ -S /bin/bash
-#$ -N HIDDENcov-nona
+#$ -N HIDDENpa-nona2
#$ -o /work/$USER/$JOB_NAME-$JOB_ID-$TASK_ID.log
#$ -j y
@@ -19,20 +19,20 @@ module load GCC/8.3.0
module load OpenMPI/3.1.4
module load R/3.6.2
-output=/data/splot/HIDDEN/output/HIDDENcov.nona
+output=/data/splot/HIDDEN/output/HIDDENpa-nona2
Rscript \
cli_01b.r \
- --max.inter.t 1 \
- --chunk.i $SGE_TASK_ID \
- --chunkn 53 \
- --nperm 99 \
- --ncores ${NSLOTS:-1} \
+ --max.inter.t 11 \
+ --chunk.i "$SGE_TASK_ID" \
+ --chunkn 336 \
+ --nperm 999 \
+ --ncores "${NSLOTS:-1}" \
--start.round 1 \
- --relax.round 1 \
- --exclude.na T \
- /data/splot/HIDDEN/species.v2.10perc.cov.txt \
- /data/splot/HIDDEN/traits.v2.10perc.txt \
+ --relax.round 8 \
+ --exclude.na F \
+ /data/splot/HIDDEN/species.v2.10perc.pa.txt \
+ /data/splot/HIDDEN/traits.v2.10perc.pa.sign.txt \
"$output" \
"get.corXY.bootstrap" \
"all" \
--
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