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Maria Voigt authoredMaria Voigt authored
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submit_pipeline_model.sh 1.30 KiB
#!/bin/bash
# ------------------------------------------------------------------------------
# config
# ------------------------------------------------------------------------------
# here somehow write the prefix depending on what we are testing
JOB_NAME_PREFIX=ppln_noa_50_ac
INPUT_PATH='/work/voigtma/ppln_noae_50_ac-2017-02-09T18-31-21'
NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S)
OUTPUT_PATH=/work/$USER/$NAME
# qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different)
QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
# ------------------------------------------------------------------------------
# model-fitting & prediction
# ------------------------------------------------------------------------------
MODEL_JOB_ID_FITTING=$($QSUB \
-N ${JOB_NAME_PREFIX}_fitting \
$HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model_ac_term.sh \
-i $INPUT_PATH \
--ESW-aerial 0.075 \
--stability)
# prediction submitten
MODEL_JOB_ID_PRED=$($QSUB \
-N ${JOB_NAME_PREFIX}_prediction \
-hold_jid $MODEL_JOB_ID_FITTING \
-t 1999:2015 \
$HOME/orangutan_density_distribution/src/prediction/submit_abundance_pred.sh \
-i $OUTPUT_PATH \
--predictor-input-directory $INPUT_PATH \
-q)