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Commit 5fcf943f authored by Maria Voigt's avatar Maria Voigt
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initial commit for doing bootstrapped pred per year

includes R-script and two submit scripts
parent da1da7ef
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#!/bin/bash
#$ -N boot_abundPred
#$ -S /bin/bash
#$ -l h_rt=36:00:00
#$ -l h_vmem=50G,highmem
#$ -o /work/$USER/$JOB_NAME-$JOB_ID-$TASK_ID.log
#$ -j y
#$ -l avx
#$ -m ea
module load R
module load git 2> /dev/null
printf "current git version: %s" $(git rev-parse HEAD)
[[ -n $(git diff-index --name-only HEAD) ]] && echo "-dirty"
printf "\n"
mkdir -p ${OUTPUT_PATH:=/work/$USER/$JOB_NAME-$JOB_ID}
YEAR=$SGE_TASK_ID
Rscript \
~/orangutan_density_distribution/src/prediction/abundance_prediction_bootstrap_per_year.R \
-o $OUTPUT_PATH \
--year-to-predict $YEAR \
--worker=${NSLOTS:-1} \
"$@"
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