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Commit 8c03edc4 authored by Maria Voigt's avatar Maria Voigt
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initial commit submit script for bootstrap

parent 9f81c600
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#!/bin/bash
#$ -N boot
#$ -S /bin/bash
#$ -l h_rt=12:00:00
#$ -l h_vmem=10G,highmem
#$ -o /work/$USER/$JOB_NAME-$JOB_ID.log
#$ -j y
#$ -pe smp 10-28
#$ -m ea
module load R
module load git 2> /dev/null
printf "current git version: %s" $(git rev-parse HEAD)
[[ -n $(git diff-index --name-only HEAD) ]] && echo "-dirty"
printf "\n"
mkdir -p ${OUTPUT_PATH:=/work/$USER/$JOB_NAME-$JOB_ID}
export MC_CORES=${NSLOTS:-1}
Rscript \
~/orangutan_density_distribution/src/validation/abundance_model_bootstrap.R \
-o $OUTPUT_PATH \
"$@"
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