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Commit 11b3f65b authored by Marco Matthies's avatar Marco Matthies
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Add initial crop model comparison scripts, visualisation is still missing

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CompareCropModels/Manifest.toml 0 → 100644
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# This file is machine-generated - editing it directly is not advised
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CompareCropModels/Project.toml 0 → 100644
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[deps]
AquaCrop = "8f16cebd-c0b4-44a3-857f-c101f083256c"
LoggingExtras = "e6f89c97-d47a-5376-807f-9c37f3926c36"
Persefone = "039acd1d-2a07-4b33-b082-83a1ff0fd136"
StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3"
[sources]
Persefone = {rev = "5c4370740cdc407575c2870602f25625672fc599", url = "https://git.idiv.de/persefone/persefone-model.git"}
CompareCropModels/compare-cropmodels.jl 0 → 100644
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### Persefone.jl - a model of agricultural landscapes and ecosystems in Europe.
###
### Crop model comparison
using Dates
using DataFrames
using Logging
using LoggingExtras
using Persefone
using Random
using StableRNGs
using Test
const Ps = Persefone
import Unitful: @u_str, cm, m, km, ha, mg, g, kg, Length, Area, Mass
const m² = m^2
const km² = km^2
const ton = Persefone.AquaCropWrapper.ton
const PERSEFONE_DIR = joinpath(dirname(pathof(Persefone)), "..")
"""
showfarmplots(model)
Show information about all the farmplots in the simulation and their
crop state.
"""
function showfarmplots(io::IO, model::Ps.SimulationModel)
println(io, "Farmplots on $(model.date)")
for (i, fp) in enumerate(model.farmplots)
println(io, "$(fp.id): $(length(fp.pixels))px $(fp.soiltype) Farmer($(fp.farmer))")
end
return nothing
end
showfarmplots(model::Ps.SimulationModel) = showfarmplots(stdout, model)
"""
inittestmodel(smallmap=true)
Initialise an SimulationModel for testing purposes.
`smallmap`: use a hypothetical small landscape rather than a real one?
"""
function inittestmodel(; xsize::Int=1,
ysize::Int=1,
start_date::Date = Date(2020, 01, 01),
end_date::Date = Date(2020, 12, 31),
weather_datapath::AbstractString=joinpath(PERSEFONE_DIR, "data/regions/jena/weather.csv"),
rng_seed::Int=42,
cropdir_almass::AbstractString=joinpath(PERSEFONE_DIR, "data/crops/almass/"),
cropdir_aquacrop::AbstractString=joinpath(PERSEFONE_DIR, "data/crops/aquacrop/")
)
settings = Dict{String, Any}(
"core.startdate" => start_date,
)
weather = Ps.initweather(weather_datapath, start_date, end_date)
# crop types, with remapped names
allcrops = Dict{String, Ps.AbstractCropType}()
# ALMaSS crop types
crops_almass = Ps.ALMaSS.readcropparameters(cropdir_almass)
for (cropname, croptype) in crops_almass
push!(allcrops, "ALMaSS/$(cropname)" => croptype)
end
# AquaCrop crop types
crops_aquacrop = Ps.AquaCropWrapper.readcropparameters(cropdir_aquacrop)
for (cropname, croptype) in crops_aquacrop
if croptype.name != croptype.aquacrop_name
push!(allcrops, "AquaCrop/$(cropname) {$(croptype.aquacrop_name)}" => croptype)
else
push!(allcrops, "AquaCrop/$(cropname)" => croptype)
end
end
landscape = smalltestlandscape(xsize, ysize)
model = AgricultureModel(;
settings,
rng = StableRNG(rng_seed),
logger = global_logger(),
date = start_date,
landscape,
weather,
crops = allcrops
)
return model
end
"""
smalltestlandscape([xsize], [ysize])
Create a `xsize` x `ysize` landscape with agriculture landcover type.
"""
function smalltestlandscape(xsize::Int=8, ysize::Int=8)
landscape = Matrix{Pixel}(undef, xsize, ysize)
for x in 1:xsize, y in 1:ysize
landscape[x,y] = Pixel(Ps.agriculture)
end
return landscape
end
function compare_cropmodels(; crops_compare::Vector{Tuple{String,String,Ps.AnnualDate}} = [
("ALMaSS/maize", "AquaCrop/maize", Ps.AnnualDate(4, 15)),
],
start_date = Date(2020, 01, 01),
end_date = Date(2020, 12, 31),
weather_datapath::AbstractString=joinpath(PERSEFONE_DIR, "data/regions/jena/weather.csv"),
rng_seed::Int=42,
cropdir_almass::AbstractString=joinpath(PERSEFONE_DIR, "data/crops/almass/"),
cropdir_aquacrop::AbstractString=joinpath(PERSEFONE_DIR, "data/crops/aquacrop/")
)
allcrops = vcat(map(x -> x[1], crops_compare), map(x -> x[2], crops_compare))
sowingdates = Dict{Ps.AnnualDate, Vector{String}}()
for (almass_name, aquacrop_name, ad) in crops_compare
if ! haskey(sowingdates, ad)
sowingdates[ad] = String[]
end
push!(sowingdates[ad], almass_name)
push!(sowingdates[ad], aquacrop_name)
end
@show sowingdates
ncrops = length(allcrops)
# Note: exclude Ps.nosoildata, Ps.nosoil
allsoiltypes = filter(x -> x != Ps.nosoildata && x!= Ps.nosoil, instances(Ps.SoilType))
nsoiltypes = length(allsoiltypes)
model = inittestmodel(; xsize=ncrops, ysize=nsoiltypes,
start_date, end_date, weather_datapath,
rng_seed, cropdir_almass, cropdir_aquacrop)
croptype_to_cropname = Dict(ct => cn for (cn, ct) in model.crops)
@show length(model.farmplots)
# create farmplots and crop states
farmplot_id = 1
farmer_id = 1
for i in 1:ncrops
cropname = "ALMaSS/natural grass"
for j in 1:nsoiltypes
# soiltype
soiltype = allsoiltypes[j]
model.landscape[i, j].soiltype = soiltype
# farmplot, cropstate
croptype = model.crops[cropname]
cropstate = Ps.makecropstate(croptype, model, soiltype)
pixels = [(i, j)]
fp = FarmPlot(farmplot_id, pixels, farmer_id, soiltype, cropstate)
push!(model.farmplots, fp)
farmplot_id += 1
farmer_id += 1
end
end
# run simulation
df_out_almass = DataFrame(:date => Date[], :farmplot_idx => Int[], :cropname => String[],
:height => typeof(1.0cm)[], :biomass => Float64[])
df_out_aquacrop = DataFrame(:date => Date[], :farmplot_idx => Int[], :cropname => String[], :soiltype => Ps.SoilType[],
:height => typeof(1.0cm)[], :biomass => typeof(1.0*ton/ha)[])
has_sowed = falses(length(model.farmplots))
for day in start_date:end_date
ad = Ps.AnnualDate(model.date)
if haskey(sowingdates, ad)
for cropname in sowingdates[ad]
i = findfirst(==(cropname), allcrops)
for j = 1:nsoiltypes
fp_idx = (i-1) * nsoiltypes + j
@info "Sowing \"$cropname\" on farmplot $fp_idx"
Ps.sow!(model.farmplots[fp_idx], model, cropname)
has_sowed[fp_idx] = true
end
end
showfarmplots(model)
end
stepsimulation!(model)
for (i, fp) in enumerate(model.farmplots)
has_sowed[i] || continue
croptype = Ps.croptype(fp)
if croptype isa Ps.ALMaSS.CropType
push!(df_out_almass, (; date=model.date, farmplot_idx=i, cropname=croptype_to_cropname[croptype],
height=fp.cropstate.veg_height, biomass=fp.cropstate.veg_biomass))
elseif croptype isa Ps.AquaCropWrapper.CropType
height = cropheight(fp)
biomass = fp.cropstate.cropstate.dayout.Biomass |> last
push!(df_out_aquacrop, (; date=model.date, farmplot_idx=i,
cropname=croptype_to_cropname[croptype], soiltype=fp.cropstate.soiltype,
height, biomass))
else
error("Unknown crop type $(croptype(fp))")
end
end
end
@info "Simulated for $(end_date - start_date + Dates.Day(1))."
return model, df_out_almass, df_out_aquacrop, sowingdates
end
function compare_cropmodels_summer(
; crops_compare::Vector{Tuple{String,String,Ps.AnnualDate}} = [
("ALMaSS/maize", "AquaCrop/maize", Ps.AnnualDate(4, 23)),
],
year::Int = 2020, # simulates January 1st to December 31st
weather_datapath::AbstractString=joinpath(PERSEFONE_DIR, "data/regions/jena/weather.csv"),
rng_seed::Int=42,
cropdir_almass::AbstractString=joinpath(PERSEFONE_DIR, "data/crops/almass/"),
cropdir_aquacrop::AbstractString=joinpath(PERSEFONE_DIR, "data/crops/aquacrop/")
)
return compare_cropmodels(; crops_compare, start_date=Date(year, 01, 01), end_date=Date(year, 12, 31),
weather_datapath, rng_seed, cropdir_almass, cropdir_aquacrop)
end
function compare_cropmodels_winter(
; crops_compare::Vector{Tuple{String,String,Ps.AnnualDate}} = [
("ALMaSS/winter wheat", "AquaCrop/winter wheat {wheatGDD}", Ps.AnnualDate(10, 23)),
("ALMaSS/winter rape", "AquaCrop/winter rape {rapeseed}", Ps.AnnualDate(8, 23)),
("ALMaSS/winter barley", "AquaCrop/winter barley {barleyGDD}", Ps.AnnualDate(9, 23)),
],
year::Int = 2020, # simulates from Date(year, 01, 01) to Date(year + 1, 12, 31)
weather_datapath::AbstractString=joinpath(PERSEFONE_DIR, "data/regions/jena/weather.csv"),
rng_seed::Int=42,
cropdir_almass::AbstractString=joinpath(PERSEFONE_DIR, "data/crops/almass/"),
cropdir_aquacrop::AbstractString=joinpath(PERSEFONE_DIR, "data/crops/aquacrop/")
)
return compare_cropmodels(; crops_compare, start_date=Date(year, 01, 01), end_date=Date(year + 1, 12, 31),
weather_datapath, rng_seed, cropdir_almass, cropdir_aquacrop)
end
CompareCropModels/run.jl 0 → 100644
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− 0
View file @ 11b3f65b
include("compare-cropmodels.jl")
model, df_out_almass, df_out_aquacrop, sowingdates = compare_cropmodels_summer()
# TODO: visualise results
model, df_out_almass, df_out_aquacrop, sowingdates = compare_cropmodels_winter()
# TODO: visualise results
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