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landscape.jl 8.83 KiB
### Persefone.jl - a model of agricultural landscapes and ecosystems in Europe.
###
### This file manages the landscape maps that underlie the model.
###
## IMPORTANT: do not change the order of this enum, or initlandscape() will break!
"The land cover classes encoded in the Mundialis Sentinel data."
@enum LandCover nodata forest grass water builtup soil agriculture
"The types of landscape event that can be simulated"
@enum EventType tillage sowing fertiliser pesticide harvesting
#XXX rename to Management or similar?
"""
Pixel
A pixel is a simple data structure to combine land use and ownership information
in a single object. The model landscape consists of a matrix of pixels.
(Note: further landscape information may be added here in future.)
"""
mutable struct Pixel
landcover::LandCover
fieldid::Union{Missing,Int64}
events::Vector{EventType}
animals::Vector{Int64}
end
"""
FarmEvent
A data structure to define a landscape event, giving its type,
spatial extent, and duration.
"""
mutable struct FarmEvent
etype::EventType
pixels::Vector{Tuple{Int64,Int64}}
duration::Int64
end
"""
initlandscape(landcovermap, farmfieldsmap)
Initialise the model landscape based on the map files specified in the
configuration. Returns a matrix of pixels.
"""
function initlandscape(landcovermap::String, farmfieldsmap::String)
@debug "Initialising landscape"
#TODO replace errors with exception
!(isfile(landcovermap)) && Base.error("Landcover map $(landcovermap) doesn't exist.")
!(isfile(farmfieldsmap)) && Base.error("Field map $(farmfieldsmap) doesn't exist.")
#XXX can I read the files in using FileIO, to avoid the GeoArrays dependency?
# read in TIFFs, replacing missing values with 0
landcover = coalesce(GeoArrays.read(landcovermap), 0)
farmfields = coalesce(GeoArrays.read(farmfieldsmap), 0)
(size(landcover) != size(farmfields)) && Base.error("Input map sizes don't match.")
width, height = size(landcover)[1:2]
landscape = Matrix{Pixel}(undef, width, height)
for x in 1:width
for y in 1:height
# convert the numeric landcover value to LandCover, then create the Pixel object
lcv = LandCover(Int(landcover[x,y][1]/10))
ff = Int64(farmfields[x,y][1])
(iszero(ff)) && (ff = missing)
landscape[x,y] = Pixel(lcv, ff, Vector{Symbol}(), [])
end
end
return landscape
end
"""
updateevents!(model)
Cycle through the list of events, removing those that have expired.
"""
function updateevents!(model::SimulationModel)
expiredevents = []
for e in 1:length(model.events)
event = model.events[e]
event.duration -= 1
if event.duration <= 0
push!(expiredevents, e)
for p in event.pixels
i = findnext(x -> x == event.etype, model.landscape[p...].events, 1)
deleteat!(model.landscape[p...].events, i)
end
end
end
deleteat!(model.events, expiredevents)
end
"""
createevent!(model, pixels, name, duration=1)
Add a farm event to the specified pixels (a vector of position tuples) for a given duration.
"""
function createevent!(model::SimulationModel, pixels::Vector{Tuple{Int64,Int64}},
name::EventType, duration::Int64=1)
push!(model.events, FarmEvent(name, pixels, duration))
for p in pixels
push!(model.landscape[p...].events, name)
end
end
"""
landcover(position, model)
Return the land cover class at this position (utility wrapper).
"""
function landcover(pos::Tuple{Int64,Int64}, model::SimulationModel)
model.landscape[pos...].landcover
end
"""
farmplot(position, model)
Return the farm plot at this position, or nothing if there is none (utility wrapper).
"""
function farmplot(pos::Tuple{Int64,Int64}, model::SimulationModel)
id = model.landscape[pos...].fieldid
ismissing(id) ? nothing : model.farmplots[id]
end
"""
directionto(pos, model, habitatdescriptor)
Calculate the direction from the given location to the closest location matching the
habitat descriptor function. Returns a coordinate tuple (target - position), or nothing
if no matching habitat is found. Caution: can be computationally expensive!
"""
function directionto(pos::Tuple{Int64,Int64}, model::SimulationModel, habitatdescriptor::Function)
#XXX split this up into a findnearest() and a directionto() function?
# search in expanding rectangles around the origin
(habitatdescriptor(pos, model)) && (return (0,0))
dist = 1
width, height = size(model.landscape)
while dist <= width || dist <= height #XXX is there a quicker method?
# check the upper and lower bounds of the enclosing rectangle
y1 = pos[2] - dist
y2 = pos[2] + dist
minx = maximum((pos[1]-dist, 1))
maxx = minimum((pos[1]+dist, width))
#XXX alternately, we could check individually whether y1 and y2 are in bounds, and loop
# over x for each separately (not sure if that is quicker, but it may be)
for x in minx:maxx
(y1 > 0 && habitatdescriptor((x,y1), model)) && (return (x, y1).-pos)
(y2 <= height && habitatdescriptor((x,y2), model)) && (return (x, y2).-pos)
end
# check the left and right bounds of the enclosing rectangle
x1 = pos[1] - dist
x2 = pos[1] + dist
miny = maximum((pos[2]-dist+1, 1))
maxy = minimum((pos[2]+dist-1, height))
for y in miny:maxy
(x1 > 0 && habitatdescriptor((x1,y), model)) && (return (x1,y).-pos)
(x2 <= width && habitatdescriptor((x2,y), model)) && (return (x2,y).-pos)
end
dist += 1
end
return nothing
end
"""
directionto(pos, model, habitattype)
Calculate the direction from the given location to the closest habitat of the specified type.
Returns a coordinate tuple (target - position), or nothing if no matching habitat is found.
Caution: can be computationally expensive!
"""
function directionto(pos::Tuple{Int64,Int64}, model::SimulationModel, habitattype::LandCover)
# can't use @habitat here because macros.jl is loaded later than this file
directionto(pos, model, function(p,m) landcover(p,m) == habitattype end)
end
"""
distanceto(pos, model, habitatdescriptor)
Calculate the distance from the given location to the closest location matching the
habitat descriptor function. Caution: can be computationally expensive!
"""
function distanceto(pos::Tuple{Int64,Int64}, model::SimulationModel, habitatdescriptor::Function)
target = directionto(pos, model, habitatdescriptor)
isnothing(target) && return Inf
return maximum(abs.(target))
end
"""
distanceto(pos, model, habitattype)
Calculate the distance from the given location to the closest habitat of the specified type.
Caution: can be computationally expensive!
"""
function distanceto(pos::Tuple{Int64,Int64}, model::SimulationModel, habitattype::LandCover)
# can't use @habitat here because macros.jl is loaded later than this file
distanceto(pos, model, function(p,m) landcover(p,m) == habitattype end)
end
"""
distancetoedge(pos, model)
Calculate the distance from the given location to the closest neighbouring habitat.
Caution: can be computationally expensive!
"""
function distancetoedge(pos::Tuple{Int64,Int64}, model::SimulationModel)
# can't use @habitat here because macros.jl is loaded later than this file
distanceto(pos, model, function(p,m) landcover(p,m) != landcover(pos, model) end)
end
"""
randompixel(position, model, range, habitatdescriptor)
Find a random pixel within a given `range` of the `position` that matches the
habitatdescriptor (create this using [`@habitat`](@ref)).
"""
function randompixel(pos::Tuple{Int64,Int64}, model::SimulationModel, range::Int64=1,
habitatdescriptor::Function=(pos,model)->nothing)
for x in @shuffle!(collect((pos[1]-range):(pos[1]+range)))
for y in @shuffle!(collect((pos[2]-range):(pos[2]+range)))
!inbounds((x,y), model) && continue
habitatdescriptor((x,y), model) && return (x,y)
end
end
nothing
end
"""
randomdirection(model, range=1)
Get a random direction coordinate tuple within the specified range.
"""
function randomdirection(model::SimulationModel, range::Int64=1)
Tuple(@rand(-range:range, 2))
end
"""
inbounds(pos, model)
Is the given position within the bounds of the model landscape?
"""
function inbounds(pos, model)
dims = size(model.landscape)
pos[1] > 0 && pos[1] <= dims[1] && pos[2] > 0 && pos[2] <= dims[2]
end
"""
safebounds(pos, model)
Make sure that a given position is within the bounds of the model landscape.
"""
function safebounds(pos::Tuple{Int64,Int64}, model::SimulationModel)
dims = size(model.landscape)
x, y = pos
x <= 0 && (x = 1)
x > dims[1] && (x = dims[1])
y <= 0 && (y = 1)
y > dims[2] && (y = dims[2])
(x,y)
end