Added ALMaSS crop growth data and wrote conversion script

data/almass_crop_growth_curves.csv

+crop_name,nutrient_status,growth_phase,point_type,GDD,LAI_total,LAI_green,height
+spring barley,high,janfirst,slope,99999.0,0.0,0.0,0.0
+spring barley,high,sow,start,-1.0,0.0,0.0,0.0
+spring barley,high,sow,slope,83.0,0.005466667,0.005466667,0.066666667
+spring barley,high,sow,slope,158.0,0.01,0.009866667,0.066666667
+spring barley,high,sow,slope,233.0,0.018266667,0.0184,0.106666667
+spring barley,high,sow,slope,308.0,0.033378378,0.033378378,0.081081081
+spring barley,high,sow,slope,382.0,0.0,0.0,0.060773481
+spring barley,high,sow,slope,563.0,0.0,0.0,0.154639175
+spring barley,high,sow,slope,660.0,0.0,0.0,0.066666667
+spring barley,high,sow,slope,675.0,0.0,0.0,0.138095238
+spring barley,high,sow,slope,885.0,0.0,-0.016233766,-0.029220779
+spring barley,high,sow,slope,1193.0,0.0,0.0,-0.035830619
+spring barley,high,sow,slope,1500.0,0.0,0.0,-0.000609143
+spring barley,high,marchfirst,slope,99999.0,0.0,0.0,0.0
+spring barley,high,harvest1,start,-1.0,0.3,0.0,10.0
+spring barley,high,harvest2,slope,99999.0,0.0,0.0,0.0
+spring barley,low,janfirst,slope,99999.0,0.0,0.0,0.0
+spring barley,low,sow,start,-1.0,0.0,0.0,0.0
+spring barley,low,sow,slope,83.0,0.003333333,0.003333333,0.066666667
+spring barley,low,sow,slope,158.0,0.006,0.006,0.066666667
+spring barley,low,sow,slope,233.0,0.010933333,0.010933333,0.194666667
+spring barley,low,sow,slope,308.0,0.009932886,0.009932886,0.195973154
+spring barley,low,sow,slope,457.0,0.0,0.0,0.195180723
+spring barley,low,sow,slope,540.0,0.0,0.0,0.0
+spring barley,low,sow,slope,623.0,0.0,0.0,-1.333333333
+spring barley,low,sow,slope,638.0,0.0,-0.006160164,0.0
+spring barley,low,sow,slope,1125.0,0.0,0.0,-0.000505694
+spring barley,low,marchfirst,slope,99999.0,0.0,0.0,0.0
+spring barley,low,harvest1,start,-1.0,0.2,0.0,10.0
+spring barley,low,harvest2,slope,99999.0,0.0,0.0,0.0
+winter wheat,high,janfirst,slope,99999.0,0.0,0.0,0.0
+winter wheat,high,sow,start,-1.0,0.0,0.0,0.0
+winter wheat,high,sow,slope,83.0,0.002304147,0.002304147,0.055299539
+winter wheat,high,sow,slope,300.0,0.0,0.0,0.0
+winter wheat,high,marchfirst,slope,0.0,0.0,0.0,0.0
+winter wheat,high,marchfirst,slope,107.0,0.006666667,0.006666667,0.0
+winter wheat,high,marchfirst,slope,182.0,0.016,0.016,0.172
+winter wheat,high,marchfirst,slope,257.0,0.036363636,0.036363636,0.172727273
+winter wheat,high,marchfirst,slope,334.0,0.0,0.0,0.17593985
+winter wheat,high,marchfirst,slope,600.0,0.0,0.0,0.0
+winter wheat,high,marchfirst,slope,1087.0,0.0,-0.016722408,0.0
+winter wheat,high,marchfirst,slope,1386.0,0.0,0.0,-0.000861955
+winter wheat,high,harvest1,start,-1.0,0.3,0.0,10.0
+winter wheat,high,harvest2,slope,99999.0,0.0,0.0,0.0
+winter wheat,low,janfirst,slope,99999.0,0.0,0.0,0.0
+winter wheat,low,sow,start,-1.0,0.0,0.0,0.0
+winter wheat,low,sow,slope,83.0,0.003225806,0.003225806,0.055299539
+winter wheat,low,sow,slope,300.0,0.0,0.0,0.0
+winter wheat,low,marchfirst,slope,0.0,0.0,0.0,0.0
+winter wheat,low,marchfirst,slope,107.0,0.002666667,0.002666667,0.0
+winter wheat,low,marchfirst,slope,182.0,0.010666667,0.010666667,0.149333333
+winter wheat,low,marchfirst,slope,257.0,0.012295082,0.012295082,0.151639344
+winter wheat,low,marchfirst,slope,379.0,0.0,0.0,0.150678733
+winter wheat,low,marchfirst,slope,600.0,0.0,0.0,0.0
+winter wheat,low,marchfirst,slope,750.0,0.0,-0.005,0.0
+winter wheat,low,marchfirst,slope,1350.0,0.0,0.0,-0.000658902
+winter wheat,low,harvest1,start,-1.0,0.42,0.0,10.0
+winter wheat,low,harvest2,slope,99999.0,0.0,0.0,0.0
+undersown spring barley,high,janfirst,slope,99999.0,0.0,0.0,0.0
+undersown spring barley,high,sow,start,-1.0,0.0,0.0,0.0
+undersown spring barley,high,sow,slope,83.0,0.005466667,0.005466667,0.066666667
+undersown spring barley,high,sow,slope,158.0,0.01,0.009866667,0.066666667
+undersown spring barley,high,sow,slope,233.0,0.018266667,0.0184,0.212
+undersown spring barley,high,sow,slope,308.0,0.033378378,0.033378378,0.213513514
+undersown spring barley,high,sow,slope,382.0,0.0,0.0,0.21160221
+undersown spring barley,high,sow,slope,563.0,0.0,0.0,0.0
+undersown spring barley,high,sow,slope,660.0,0.0,0.0,-1.333333333
+undersown spring barley,high,sow,slope,675.0,0.0,0.0,0.0
+undersown spring barley,high,sow,slope,885.0,0.0,-0.016233766,0.0
+undersown spring barley,high,sow,slope,1193.0,0.0,0.0,-0.000607251
+undersown spring barley,high,marchfirst,slope,99999.0,0.0,0.0,0.0
+undersown spring barley,high,harvest1,start,-1.0,0.275,0.165,5.0
+undersown spring barley,high,harvest1,slope,0.0,0.005625,0.003375,0.1
+undersown spring barley,high,harvest1,slope,40.0,0.002857143,0.005714286,0.0
+undersown spring barley,high,harvest1,slope,75.0,0.012,0.012,0.013333333
+undersown spring barley,high,harvest1,slope,150.0,0.022666667,0.024,0.08
+undersown spring barley,high,harvest1,slope,225.0,0.040909091,0.040909091,0.068181818
+undersown spring barley,high,harvest1,slope,269.0,0.0,0.0,0.08203125
+undersown spring barley,high,harvest1,slope,525.0,-5.03e-05,-5.03e-05,-0.000402115
+undersown spring barley,high,harvest2,start,-1.0,0.5,0.5,10.0
+undersown spring barley,high,harvest2,slope,0.0,0.008,0.008,0.133333333
+undersown spring barley,high,harvest2,slope,75.0,0.018666667,0.018666667,0.08
+undersown spring barley,high,harvest2,slope,150.0,0.04,0.04,0.04
+undersown spring barley,high,harvest2,slope,225.0,0.0,0.0,0.07
+undersown spring barley,high,harvest2,slope,525.0,-5.03e-05,-5.03e-05,-0.000402115
+undersown spring barley,low,janfirst,slope,99999.0,0.0,0.0,0.0
+undersown spring barley,low,sow,start,-1.0,0.0,0.0,0.0
+undersown spring barley,low,sow,slope,83.0,0.003333333,0.003333333,0.066666667
+undersown spring barley,low,sow,slope,158.0,0.006,0.006,0.066666667
+undersown spring barley,low,sow,slope,233.0,0.010933333,0.010933333,0.194666667
+undersown spring barley,low,sow,slope,308.0,0.009932886,0.009932886,0.195973154
+undersown spring barley,low,sow,slope,457.0,0.0,0.0,0.195180723
+undersown spring barley,low,sow,slope,540.0,0.0,0.0,0.0
+undersown spring barley,low,sow,slope,623.0,0.0,0.0,-1.333333333
+undersown spring barley,low,sow,slope,638.0,0.0,-0.006160164,0.0
+undersown spring barley,low,sow,slope,1125.0,0.0,0.0,-0.000505694
+undersown spring barley,low,marchfirst,slope,99999.0,0.0,0.0,0.0
+undersown spring barley,low,harvest1,start,-1.0,0.7,0.5,9.0
+undersown spring barley,low,harvest1,slope,0.0,0.0,0.001333333,0.0
+undersown spring barley,low,harvest1,slope,75.0,0.017333333,0.018666667,0.013333333
+undersown spring barley,low,harvest1,slope,150.0,0.04,0.04,0.08
+undersown spring barley,low,harvest1,slope,225.0,0.0,0.0,0.08
+undersown spring barley,low,harvest1,slope,525.0,0.0,-5.03e-05,-0.000402115
+undersown spring barley,low,harvest2,start,-1.0,0.5,0.5,10.0
+undersown spring barley,low,harvest2,slope,0.0,0.008,0.008,0.133333333
+undersown spring barley,low,harvest2,slope,75.0,0.018666667,0.018666667,0.0
+undersown spring barley,low,harvest2,slope,150.0,0.04,0.04,0.08
+undersown spring barley,low,harvest2,slope,225.0,0.0,0.0,0.08
+undersown spring barley,low,harvest2,slope,525.0,-5.03e-05,-5.03e-05,-0.000402115
+peas/beans,high,janfirst,slope,99999.0,0.0,0.0,0.0
+peas/beans,high,sow,start,-1.0,0.0,0.0,0.0
+peas/beans,high,sow,slope,113.0,0.001069519,0.001069519,0.064171123
+peas/beans,high,sow,slope,300.0,0.012,0.012,0.186666667
+peas/beans,high,sow,slope,375.0,0.037333333,0.037333333,0.2
+peas/beans,high,sow,slope,450.0,0.06875,0.06875,0.1875
+peas/beans,high,sow,slope,466.0,0.0,0.0,0.192513369
+peas/beans,high,sow,slope,653.0,-0.005952381,-0.011904762,-0.130952381
+peas/beans,high,sow,slope,1073.0,0.0,0.0,-0.000252714
+peas/beans,high,marchfirst,slope,99999.0,0.0,0.0,0.0
+peas/beans,high,harvest1,start,-1.0,0.2,0.0,5.0
+peas/beans,high,harvest2,slope,99999.0,0.0,0.0,0.0
+spring rape,high,janfirst,slope,99999.0,0.0,0.0,0.0
+spring rape,high,sow,start,-1.0,0.0,0.0,0.0
+spring rape,high,sow,slope,105.0,0.005333333,0.005333333,0.04
+spring rape,high,sow,slope,180.0,0.010666667,0.010666667,0.026666667
+spring rape,high,sow,slope,255.0,0.018666667,0.018666667,0.066666667
+spring rape,high,sow,slope,330.0,0.034285714,0.034285714,0.171428571
+spring rape,high,sow,slope,400.0,0.0,0.0,0.453781513
+spring rape,high,sow,slope,638.0,0.0,0.0,0.0
+spring rape,high,sow,slope,1121.0,0.0,-0.028901734,0.0
+spring rape,high,sow,slope,1294.0,0.0,0.0,-0.001317056
+spring rape,high,marchfirst,slope,99999.0,0.0,0.0,0.0
+spring rape,high,harvest1,start,-1.0,0.1,0.0,10.0
+spring rape,high,harvest2,slope,99999.0,0.0,0.0,0.0
+spring rape,low,janfirst,slope,99999.0,0.0,0.0,0.0
+spring rape,low,sow,start,-1.0,0.0,0.0,0.0
+spring rape,low,sow,slope,105.0,0.002666667,0.002666667,0.04
+spring rape,low,sow,slope,180.0,0.005333333,0.005333333,0.026666667
+spring rape,low,sow,slope,255.0,0.009333333,0.009333333,0.053333333
+spring rape,low,sow,slope,330.0,0.017346939,0.017346939,0.163265306
+spring rape,low,sow,slope,428.0,0.0,0.0,0.357142857
+spring rape,low,sow,slope,638.0,0.0,0.0,0.0
+spring rape,low,sow,slope,900.0,0.0,-0.00887574,0.0
+spring rape,low,sow,slope,1238.0,0.0,0.0,-0.001012545
+spring rape,low,marchfirst,slope,99999.0,0.0,0.0,0.0
+spring rape,low,harvest1,start,-1.0,0.1,0.0,10.0
+spring rape,low,harvest2,slope,99999.0,0.0,0.0,0.0
+winter rape,high,janfirst,slope,99999.0,0.0,0.0,0.0
+winter rape,high,sow,start,-1.0,0.0,0.0,0.0
+winter rape,high,sow,slope,105.0,0.004,0.004,0.04
+winter rape,high,sow,slope,180.0,0.004,0.004,0.026666667
+winter rape,high,sow,slope,255.0,0.0075,0.0075,0.058333333
+winter rape,high,sow,slope,375.0,0.002222222,0.002222222,0.013333333
+winter rape,high,sow,slope,600.0,0.0,0.0,0.0
+winter rape,high,marchfirst,slope,0.0,0.0,0.0,0.0
+winter rape,high,marchfirst,slope,92.0,0.013333333,0.013333333,0.106666667
+winter rape,high,marchfirst,slope,167.0,0.029850746,0.029850746,0.388059701
+winter rape,high,marchfirst,slope,234.0,0.0,0.0,0.435146444
+winter rape,high,marchfirst,slope,473.0,0.0,0.0,0.0
+winter rape,high,marchfirst,slope,869.0,0.0,-0.009960159,0.0
+winter rape,high,marchfirst,slope,1371.0,0.0,0.0,-0.001520866
+winter rape,high,harvest1,start,-1.0,0.1,0.0,10.0
+winter rape,high,harvest2,slope,99999.0,0.0,0.0,0.0
+NA,low,janfirst,slope,99999.0,0.0,0.0,0.0
+NA,low,sow,start,-1.0,0.0,0.0,0.0
+NA,low,sow,slope,105.0,0.002666667,0.002666667,0.04
+NA,low,sow,slope,180.0,0.005333333,0.005333333,0.026666667
+NA,low,sow,slope,255.0,0.011666667,0.011666667,0.041666667
+NA,low,sow,slope,375.0,0.002222222,0.002222222,0.017777778
+NA,low,sow,slope,600.0,-2.52e-05,-2.52e-05,-0.000140846
+NA,low,marchfirst,slope,0.0,0.0,0.0,0.0
+NA,low,marchfirst,slope,107.0,0.004,0.004,0.106666667
+NA,low,marchfirst,slope,182.0,0.014634146,0.014634146,0.329268293
+NA,low,marchfirst,slope,264.0,0.0,0.0,0.334821429
+NA,low,marchfirst,slope,488.0,0.0,0.0,0.0
+NA,low,marchfirst,slope,713.0,0.0,-0.005714286,0.0
+NA,low,marchfirst,slope,1238.0,0.0,0.0,-0.001215055
+NA,low,harvest1,start,-1.0,0.1,0.0,10.0
+NA,low,harvest2,slope,99999.0,0.0,0.0,0.0
+carrots,high,janfirst,slope,99999.0,0.0,0.0,0.0
+carrots,high,sow,start,-1.0,0.0,0.0,0.0
+carrots,high,sow,slope,225.0,0.000266667,0.000266667,0.026666667
+carrots,high,sow,slope,300.0,0.001066667,0.001066667,0.026666667
+carrots,high,sow,slope,375.0,0.002,0.002,0.026666667
+carrots,high,sow,slope,450.0,0.003333333,0.003333333,0.026666667
+carrots,high,sow,slope,525.0,0.009333333,0.009333333,0.053333333
+carrots,high,sow,slope,600.0,0.005333333,0.005333333,0.053333333
+carrots,high,sow,slope,750.0,0.01,0.01,0.016666667
+carrots,high,sow,slope,1050.0,-5.05e-05,-5.05e-05,-0.000252655
+carrots,high,marchfirst,slope,99999.0,0.0,0.0,0.0
+carrots,high,harvest1,start,-1.0,0.0,0.0,0.0
+carrots,high,harvest2,slope,99999.0,0.0,0.0,0.0
+carrots,low,janfirst,slope,99999.0,0.0,0.0,0.0
+carrots,low,sow,start,-1.0,0.0,0.0,0.0
+carrots,low,sow,slope,225.0,0.000266667,0.000266667,0.026666667
+carrots,low,sow,slope,300.0,0.001066667,0.001066667,0.026666667
+carrots,low,sow,slope,375.0,0.002,0.002,0.026666667
+carrots,low,sow,slope,450.0,0.003333333,0.004666667,0.026666667
+carrots,low,sow,slope,525.0,0.008,0.006666667,0.04
+carrots,low,sow,slope,600.0,0.004,0.004,0.046666667
+carrots,low,sow,slope,750.0,0.004333333,0.004333333,0.013333333
+carrots,low,sow,slope,1050.0,-3.03e-05,-3.03e-05,-0.000222337
+carrots,low,marchfirst,slope,99999.0,0.0,0.0,0.0
+carrots,low,harvest1,start,-1.0,0.0,0.0,0.0
+carrots,low,harvest2,slope,99999.0,0.0,0.0,0.0
+winter rye,high,janfirst,slope,99999.0,0.0,0.0,0.0
+winter rye,high,sow,start,-1.0,0.0,0.0,0.0
+winter rye,high,sow,slope,83.0,0.002304147,0.002304147,0.069124424
+winter rye,high,sow,slope,300.0,0.0,0.0,0.0
+winter rye,high,marchfirst,slope,0.0,0.0,0.0,0.0
+winter rye,high,marchfirst,slope,107.0,0.014666667,0.014666667,0.066666667
+winter rye,high,marchfirst,slope,182.0,0.050746269,0.050746269,0.298507463
+winter rye,high,marchfirst,slope,249.0,0.0,0.0,0.234741784
+winter rye,high,marchfirst,slope,675.0,0.0,0.0,0.0
+winter rye,high,marchfirst,slope,1082.0,-0.006920415,-0.017301038,0.0
+winter rye,high,marchfirst,slope,1371.0,0.0,0.0,-0.001419475
+winter rye,high,harvest1,start,-1.0,0.3,0.0,10.0
+winter rye,high,harvest2,slope,99999.0,0.0,0.0,0.0
+winter rye,low,janfirst,slope,99999.0,0.0,0.0,0.0
+winter rye,low,sow,start,-1.0,0.0,0.0,0.0
+winter rye,low,sow,slope,83.0,0.002304147,0.002304147,0.069124424
+winter rye,low,sow,slope,300.0,-5.02e-06,-5.02e-06,-0.000150453
+winter rye,low,marchfirst,slope,0.0,0.0,0.0,0.0
+winter rye,low,marchfirst,slope,107.0,0.006666667,0.006666667,0.066666667
+winter rye,low,marchfirst,slope,182.0,0.024390244,0.024390244,0.243902439
+winter rye,low,marchfirst,slope,264.0,0.0,0.0,0.194647202
+winter rye,low,marchfirst,slope,675.0,0.0,0.0,0.0
+winter rye,low,marchfirst,slope,750.0,0.0,-0.005,0.0
+winter rye,low,marchfirst,slope,1350.0,0.0,0.0,-0.001216434
+winter rye,low,harvest1,start,-1.0,0.2,0.0,10.0
+winter rye,low,harvest2,slope,99999.0,0.0,0.0,0.0
+triticale,high,janfirst,slope,99999.0,0.0,0.0,0.0
+triticale,high,sow,start,-1.0,0.0,0.0,0.0
+triticale,high,sow,slope,83.0,0.002304147,0.002304147,0.046082949
+triticale,high,sow,slope,300.0,0.0,0.0,0.0
+triticale,high,marchfirst,slope,0.0,0.0,0.0,0.0
+triticale,high,marchfirst,slope,107.0,0.009333333,0.009333333,0.066666667
+triticale,high,marchfirst,slope,182.0,0.026666667,0.026666667,0.133333333
+triticale,high,marchfirst,slope,257.0,0.048648649,0.048648649,0.27027027
+triticale,high,marchfirst,slope,294.0,0.0,0.0,0.196850394
+triticale,high,marchfirst,slope,675.0,0.0,0.0,0.073710074
+triticale,high,marchfirst,slope,1082.0,0.0,-0.017301038,0.0
+triticale,high,marchfirst,slope,1371.0,0.0,0.0,-0.001419475
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+permanent set-aside,high,janfirst,slope,105.0,-5.18e-06,0.0,5.01e-05
+permanent set-aside,high,sow,slope,99999.0,0.0,0.0,0.0
+permanent set-aside,high,marchfirst,slope,0.0,0.002101038,0.000941176,0.017301038
+permanent set-aside,high,marchfirst,slope,289.0,0.000650246,0.001970443,0.017241379
+permanent set-aside,high,marchfirst,slope,695.0,0.0,0.0,0.02484472
+permanent set-aside,high,marchfirst,slope,1017.0,-0.000220824,0.0,-0.006242197
+permanent set-aside,high,marchfirst,slope,2619.0,0.0,-0.003571429,-0.05952381
+permanent set-aside,high,marchfirst,slope,2787.0,-2.62e-05,-1.03e-05,-0.000308604
+permanent set-aside,high,harvest1,start,-1.0,0.6,0.4,15.0
+permanent set-aside,high,harvest1,slope,0.0,0.006145329,0.001384083,0.069204152
+permanent set-aside,high,harvest1,slope,289.0,0.000650246,0.001970443,0.007389163
+permanent set-aside,high,harvest1,slope,695.0,0.000819876,0.0,0.01242236
+permanent set-aside,high,harvest1,slope,1017.0,0.0,0.0,0.0
+permanent set-aside,high,harvest1,slope,2619.0,-0.002105714,-0.003571429,-0.029761905
+permanent set-aside,high,harvest1,slope,2787.0,0.0,-1.03e-05,0.0
+permanent set-aside,high,harvest2,slope,99999.0,0.0,0.0,0.0
+oats,high,janfirst,slope,99999.0,0.0,0.0,0.0
+oats,high,sow,slope,0.0,0.0,0.0,0.0
+oats,high,sow,slope,83.0,0.005466667,0.005466667,0.066666667
+oats,high,sow,slope,158.0,0.01,0.009866667,0.093333333
+oats,high,sow,slope,233.0,0.018266667,0.0184,0.306666667
+oats,high,sow,slope,308.0,0.033378378,0.033378378,0.540540541
+oats,high,sow,slope,382.0,0.0,0.0,0.359116022
+oats,high,sow,slope,563.0,0.0,0.0,0.0
+oats,high,sow,slope,660.0,0.0,0.0,0.0
+oats,high,sow,slope,675.0,0.0,0.0,0.0
+oats,high,sow,slope,938.0,-0.011450382,-0.019083969,0.0
+oats,high,sow,slope,1200.0,0.0,0.0,0.0
+oats,high,marchfirst,slope,99999.0,0.0,0.0,0.0
+oats,high,harvest1,start,-1.0,0.3,0.0,10.0
+oats,high,harvest2,slope,99999.0,0.0,0.0,0.0
+oats,low,janfirst,slope,99999.0,0.0,0.0,0.0
+oats,low,sow,slope,0.0,0.0,0.0,0.0
+oats,low,sow,slope,83.0,0.003333333,0.003333333,0.066666667
+oats,low,sow,slope,158.0,0.006,0.006,0.093333333
+oats,low,sow,slope,233.0,0.010933333,0.010933333,0.306666667
+oats,low,sow,slope,308.0,0.009932886,0.009932886,0.268456376
+oats,low,sow,slope,457.0,0.0,0.0,0.662650602
+oats,low,sow,slope,540.0,0.0,0.0,0.0
+oats,low,sow,slope,623.0,0.0,0.0,0.0
+oats,low,sow,slope,675.0,-0.00307377,-0.006147541,0.0
+oats,low,sow,slope,1163.0,0.0,0.0,0.0
+oats,low,marchfirst,slope,99999.0,0.0,0.0,0.0
+oats,low,harvest1,start,-1.0,0.3,0.0,10.0
+oats,low,harvest2,slope,99999.0,0.0,0.0,0.0
+potatoes,high,janfirst,slope,99999.0,0.0,0.0,0.0
+potatoes,high,sow,slope,0.0,0.0,0.0,0.0
+potatoes,high,sow,slope,225.0,0.006666667,0.006666667,0.133333333
+potatoes,high,sow,slope,300.0,0.002666667,0.002666667,0.133333333
+potatoes,high,sow,slope,375.0,0.004,0.004,0.133333333
+potatoes,high,sow,slope,450.0,0.005333333,0.005333333,0.133333333
+potatoes,high,sow,slope,525.0,0.009333333,0.009333333,0.133333333
+potatoes,high,sow,slope,600.0,0.012,0.012,0.0
+potatoes,high,sow,slope,675.0,0.0,0.0,0.0
+potatoes,high,sow,slope,938.0,-0.016666667,-0.02,-0.266666667
+potatoes,high,sow,slope,1088.0,0.0,0.0,0.0
+potatoes,high,marchfirst,slope,99999.0,0.0,0.0,0.0
+potatoes,high,harvest1,start,-1.0,0.0,0.0,0.0
+potatoes,high,harvest2,slope,99999.0,0.0,0.0,0.0
+potatoes,low,janfirst,slope,99999.0,0.0,0.0,0.0
+potatoes,low,sow,slope,0.0,0.0,0.0,0.0
+potatoes,low,sow,slope,225.0,0.008,0.008,0.133333333
+potatoes,low,sow,slope,300.0,0.005333333,0.005333333,0.133333333
+potatoes,low,sow,slope,375.0,0.006666667,0.006666667,0.133333333
+potatoes,low,sow,slope,450.0,0.009333333,0.009333333,0.133333333
+potatoes,low,sow,slope,525.0,0.014666667,0.014666667,0.133333333
+potatoes,low,sow,slope,600.0,0.022666667,0.022666667,0.133333333
+potatoes,low,sow,slope,675.0,0.0,0.0,0.0
+potatoes,low,sow,slope,1200.0,-0.017777778,-0.022222222,-0.222222222
+potatoes,low,sow,slope,1425.0,0.0,0.0,0.0
+potatoes,low,marchfirst,slope,99999.0,0.0,0.0,0.0
+potatoes,low,harvest1,start,-1.0,0.0,0.0,0.0
+potatoes,low,harvest2,slope,99999.0,0.0,0.0,0.0
+NA,high,janfirst,start,-1.0,1.0,1.0,10.0
+NA,high,sow,slope,99999.0,0.0,0.0,0.0
+NA,high,marchfirst,start,-1.0,1.1,1.0,10.0
+NA,high,marchfirst,slope,64.0,0.038461538,0.038461538,0.0
+NA,high,marchfirst,slope,90.0,0.022222222,0.022222222,0.0
+NA,high,marchfirst,slope,135.0,0.022222222,0.022222222,0.0
+NA,high,marchfirst,slope,180.0,0.0,0.0,0.0
+NA,high,marchfirst,slope,199.0,0.0,0.0,0.0
+NA,high,marchfirst,slope,308.0,0.0,0.0,0.0
+NA,high,marchfirst,slope,413.0,-0.007633588,-0.007633588,0.0
+NA,high,marchfirst,slope,675.0,-0.004444444,-0.004444444,0.0
+NA,high,marchfirst,slope,900.0,-9.08e-06,-9.08e-06,0.0
+NA,high,harvest1,start,-1.0,1.2,0.2,10.0
+NA,high,harvest1,slope,0.0,0.019642857,0.0,0.0
+NA,high,harvest1,slope,140.0,0.020833333,0.0,0.0
+NA,high,harvest1,slope,188.0,0.0,0.0,0.0
+NA,high,harvest1,slope,207.0,0.0,0.0,0.0
+NA,high,harvest1,slope,769.0,-0.013333333,0.0,0.0
+NA,high,harvest1,slope,844.0,-1.01e-05,0.0,0.0
+NA,high,harvest2,slope,99999.0,0.0,0.0,0.0
+heath,low,janfirst,start,-1.0,3.1878,1.0,46.368
+heath,low,janfirst,slope,105.0,-6.47e-06,0.0,-9.42e-05
+heath,low,sow,slope,99999.0,0.0,0.0,0.0
+heath,low,marchfirst,start,-1.0,2.541,0.66,36.96
+heath,low,marchfirst,slope,0.0,0.007958478,0.001176471,0.016608997
+heath,low,marchfirst,slope,289.0,0.000812808,0.002463054,0.01182266
+heath,low,marchfirst,slope,695.0,0.0,0.0,0.0
+heath,low,marchfirst,slope,1017.0,-0.00027603,0.0,-0.004014981
+heath,low,marchfirst,slope,2619.0,0.0,0.0,0.0
+heath,low,marchfirst,slope,2787.0,-3.28e-05,-2.06e-05,-0.000476978
+heath,low,harvest1,start,-1.0,0.66,0.5,10.0
+heath,low,harvest1,slope,0.0,0.00799308,0.001730104,0.114878893
+heath,low,harvest1,slope,289.0,0.000812808,0.002463054,0.01182266
+heath,low,harvest1,slope,695.0,0.001024845,0.0,0.014906832
+heath,low,harvest1,slope,1017.0,0.0,0.0,0.0
+heath,low,harvest1,slope,2619.0,-0.002632143,0.0,-0.038285714
+heath,low,harvest1,slope,2787.0,0.0,-2.06e-05,0.0
+heath,low,harvest2,slope,99999.0,0.0,0.0,0.0
+lawn,high,janfirst,start,-1.0,2.415,0.0,35.12727273
+lawn,high,janfirst,slope,105.0,-4.91e-06,0.0,-7.13e-05
+lawn,high,janfirst,slope,0.0,-2.5e-06,0.0,0.5
+lawn,high,sow,slope,99999.0,0.0,0.0,0.0
+lawn,high,marchfirst,start,-1.0,1.925,0.0,28.0
+lawn,high,marchfirst,slope,0.0,0.000865052,0.0,0.012582573
+lawn,high,marchfirst,slope,289.0,0.000615764,-0.001231527,0.008956561
+lawn,high,marchfirst,slope,695.0,0.0,0.0,0.0
+lawn,high,marchfirst,slope,1017.0,-0.000209114,0.0,-0.003041652
+lawn,high,marchfirst,slope,2619.0,0.0,0.0,0.0
+lawn,high,marchfirst,slope,2787.0,-2.48e-05,0.0,0.513973303
+lawn,high,harvest1,start,-1.0,0.5,0.0,5.0
+lawn,high,harvest1,slope,0.0,0.006055363,0.001730104,0.09594212
+lawn,high,harvest1,slope,289.0,0.000615764,0.0,0.008956561
+lawn,high,harvest1,slope,695.0,0.000776398,-0.001552795,0.011293055
+lawn,high,harvest1,slope,1017.0,0.0,0.0,0.0
+lawn,high,harvest1,slope,2619.0,-0.001994048,0.0,-0.029004329
+lawn,high,harvest1,slope,2787.0,0.0,0.0,0.0
+lawn,high,harvest1,slope,0.0,-2.5e-06,0.0,0.5
+lawn,high,harvest2,slope,99999.0,0.0,0.0,0.0
+permanent grassland, low yield,high,janfirst,start,-1.0,3.0,1.0,20.0
+permanent grassland, low yield,high,janfirst,slope,0.0,-0.005,-0.0025,-0.025
+permanent grassland, low yield,high,janfirst,slope,200.0,-2e-05,-5.01e-06,-0.000150302
+permanent grassland, low yield,high,sow,slope,99999.0,0.0,0.0,0.0
+permanent grassland, low yield,high,marchfirst,slope,0.0,0.0,0.0,-0.026548673
+permanent grassland, low yield,high,marchfirst,slope,113.0,0.008928571,0.008928571,0.053571429
+permanent grassland, low yield,high,marchfirst,slope,225.0,0.013333333,0.02,0.026666667
+permanent grassland, low yield,high,marchfirst,slope,300.0,0.012,0.025333333,0.066666667
+permanent grassland, low yield,high,marchfirst,slope,375.0,8.89e-05,8.89e-05,0.031111111
+permanent grassland, low yield,high,marchfirst,slope,1500.0,-5.08e-05,-5.08e-05,-0.000609143
+permanent grassland, low yield,high,harvest1,slope,99999.0,0.0,0.0,0.0
+permanent grassland, low yield,high,harvest2,slope,99999.0,0.0,0.0,0.0
+lucerne,high,janfirst,slope,99999.0,0.0,0.0,0.0
+lucerne,high,sow,start,-1.0,0.0,0.0,0.0
+lucerne,high,sow,slope,107.0,-0.006976744,0.004651163,0.0
+lucerne,high,sow,slope,150.0,0.010666667,0.010666667,0.12
+lucerne,high,sow,slope,225.0,0.022666667,0.022666667,0.12
+lucerne,high,sow,slope,300.0,0.040625,0.040625,0.28125
+lucerne,high,sow,slope,332.0,0.0,0.0,0.083333333
+lucerne,high,sow,slope,488.0,-5.02457e-05,-5.02457e-05,-0.000502457
+lucerne,high,marchfirst,slope,99999.0,0.0,0.0,0.0
+lucerne,high,harvest1,start,-1.0,0.5,0.5,10.0
+lucerne,high,harvest1,slope,0.0,0.016666667,0.016666667,0.333333333
+lucerne,high,harvest1,slope,30.0,0.006666667,0.006666667,0.0
+lucerne,high,harvest1,slope,75.0,0.012,0.012,0.0
+lucerne,high,harvest1,slope,150.0,0.026666667,0.026666667,0.12
+lucerne,high,harvest1,slope,225.0,0.043333333,0.043333333,0.1
+lucerne,high,harvest1,slope,255.0,0.0,0.0,0.120171674
+lucerne,high,harvest1,slope,488.0,-5.02457e-05,-5.02457e-05,-0.000502457
+lucerne,high,harvest2,slope,99999.0,0.0,0.0,0.0

data/convert_almass_data.py

+#!/usr/bin/python3
+###
+### ALMaSS uses a pretty crazy file format to specify its crop growth parameters.
+### This script converts the data to a saner long-table CSV format.
+###
+### Daniel Vedder, 02/08/2023
+###
+
+import time
+
+input_file = "almass_crop_growth_curves.pre"
+output_file = "almass_crop_growth_curves.csv"
+
+"""
+Read and parse an ALMaSS crop parameter file, returning it as a long-form array.
+
+Original data format:
+
+- first line: number of curves defined in the file
+
+- curve definition:
+  - first line: curve ID
+	- last figure: crop number
+	- if <100 -> normal growth, if >100 -> low nutrient growth
+  - each curve includes five growth phases
+  - each growth phase consists of a series of 15 inflection points and slopes
+  - four variable columns:
+	- col 1: growing degree-days at inflection point or start marker
+	- col 2: leaf area total slope
+	- col 3: leaf area green slope
+	- col 4: height slope
+  - if col 1 == -1: set variables to values in this row (start of new growth phase)
+  - if col 1 == 99999: no further growth in this growth phase
+
+See `PlantGrowthData::PlantGrowthData()` in `Landscape/plants.cpp` in the ALMaSS code.
+"""
+def parse_almass_file(filename):
+    # read in all lines and split them into their component numbers
+    cf = open(filename, 'r')
+    raw_data = cf.readlines()[1:] # the first line is irrelevant
+    cf.close()
+    for i in range(len(raw_data)):
+        raw_data[i] = list(map(float, raw_data[i].strip().split(sep='\t')))
+    # reformat the data
+    data = []
+    crop_name = ""
+    nutrient_status = ""
+    phases = ["janfirst", "sow", "marchfirst", "harvest1", "harvest2"]
+    growth_phase = -1
+    inflection_point = 0
+    points_per_phase = 15
+    for l in raw_data:
+        # the beginning of a new curve definition is denoted by a single crop number
+        if len(l) == 1:
+            inflection_point = 0
+            growth_phase = -1
+            crop_name, nutrient_status = interpret_crop_number(int(l[0]))
+            #print("Adding crop "+crop_name+" ("+nutrient_status+" nutrients)")
+            continue
+        # there are 15 inflection points per growth phase
+        if inflection_point % points_per_phase == 0: growth_phase += 1
+        inflection_point += 1
+        if (inflection_point-1) % points_per_phase > 0 and (l == [0,0,0,0] or l == [99999,0,0,0]):
+            continue # we can ignore empty inflection points
+        # save each relevant inflection or start point with their associated values
+        if l[0] == -1: point_type = "start"
+        else: point_type = "slope"
+        #if l[0] == -1 or l[0] == 99999: l[0] = 0 #XXX should we keep sign-post values?
+        data.append([crop_name, nutrient_status, phases[growth_phase], point_type]+l)
+    return data    
+
+"""
+Each growth curve is associated with a crop number, which specifies the crop type
+and nutrient growing conditions.
+
+See `PlantGrowthData::VegTypeToCurveNum()` in `Landscape/plants.cpp` in the ALMaSS code.
+"""
+def interpret_crop_number(i):
+    if i in [1, 101]: crop_type = "spring barley"
+    elif i in [2, 102]: crop_type = "winter barley"
+    #elif i in [3, 103]: crop_type = "NA" #FIXME unknown numbers
+    elif i in [4, 104]: crop_type = "winter wheat"
+    elif i in [5, 105]: crop_type = "winter rye"
+    elif i in [6, 106]: crop_type = "oats"
+    #elif i in [7, 107]: crop_type = "triticale" #FIXME 107 not defined, but probable
+    elif i == 7: crop_type = "triticale"
+    elif i in [8, 108]: crop_type = "maize"
+    elif i in [13, 113]: crop_type = "undersown spring barley"
+    elif i in [21, 121]: crop_type = "spring rape"
+    elif i == 22: crop_type = "winter rape"
+    #elif i in [22, 122]: crop_type = "winter rape" #FIXME 122 not defined, but probable
+    elif i == 25: crop_type = "permanent grassland, low yield"
+    elif i == 26: crop_type = "permanent grassland, grazed"
+    elif i == 27: crop_type = "permanent grassland, seeded"
+    #elif i == 28: crop_type = "NA" #FIXME unknown number -> 81 (PTCloverGrassGrazed1)?
+    elif i == 29: crop_type = "fodder/clover"
+    elif i == 30: crop_type = "peas/beans"
+    elif i in [41, 141]: crop_type = "carrots"
+    elif i in [50, 150]: crop_type = "potatoes"
+    #elif i in [60, 160]: crop_type = "beet" #FIXME 160 not defined, but probable
+    elif i == 60: crop_type = "beet"
+    #elif i in [65, 165]: crop_type = "NA" #FIXME unknown numbers
+    elif i == 70: crop_type = "lucerne"
+    elif i == 80: crop_type = "tulips"
+    elif i == 90: crop_type = "natural grass"
+    elif i == 91: crop_type = "no growth"
+    elif i == 92: crop_type = "permanent set-aside"
+    elif i == 94: crop_type = "lawn"
+    #elif i == 99: crop_type = "NA" #FIXME unknown number
+    elif i == 112: crop_type = "heath"
+    #elif i == 121: crop_type = "NA" #FIXME unknown number
+    else:
+        crop_type = "NA"
+        print("WARNING: unknown crop type "+str(i))
+    if i > 100: nutrient_status = "low"
+    else: nutrient_status = "high"
+    return crop_type, nutrient_status
+
+"""
+Reformat the crop parameters and output them as a long-form CSV table.
+"""
+def print_csv_file(crop_data, filename):
+    cf = open(filename, 'w')
+    cf.write("crop_name,nutrient_status,growth_phase,point_type,GDD,LAI_total,LAI_green,height\n")
+    for entry in crop_data:
+        line = ""
+        for e in entry:
+            line += str(e)+","
+        cf.write(line[:-1]+'\n')
+    cf.close()
+
+
+if __name__ == "__main__":
+    data = parse_almass_file(input_file)
+    print_csv_file(data, output_file)