Added profiling script

Manifest.toml

 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.9.1"
+julia_version = "1.9.3"
 manifest_format = "2.0"
 project_hash = "95079802d452de8f9a12096a3facc5e629c3d6d3"
 
@@ -22,10 +22,20 @@ uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
 version = "3.4.0"
 
 [[deps.Agents]]
-deps = ["CSV", "DataFrames", "DataStructures", "Distributed", "Downloads", "Graphs", "JLD2", "LazyArtifacts", "LightOSM", "LinearAlgebra", "Pkg", "ProgressMeter", "Random", "Requires", "Scratch", "StatsBase"]
-path = "../Models/agentsjl"
+deps = ["CSV", "CommonSolve", "DataFrames", "DataStructures", "Distributed", "Distributions", "Downloads", "Graphs", "JLD2", "LazyArtifacts", "LightOSM", "LinearAlgebra", "Pkg", "ProgressMeter", "Random", "Rotations", "Scratch", "StaticArrays", "StatsBase"]
+git-tree-sha1 = "adb98dc3c06912eb2af18ba80365b9a8a61806c5"
 uuid = "46ada45e-f475-11e8-01d0-f70cc89e6671"
-version = "5.6.2"
+version = "5.17.1"
+
+    [deps.Agents.extensions]
+    AgentsArrow = "Arrow"
+    AgentsOSMVisualizations = "OSMMakie"
+    AgentsVisualizations = "Makie"
+
+    [deps.Agents.weakdeps]
+    Arrow = "69666777-d1a9-59fb-9406-91d4454c9d45"
+    Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
+    OSMMakie = "76b6901f-8821-46bb-9129-841bc9cfe677"
 
 [[deps.ArchGDAL]]
 deps = ["CEnum", "ColorTypes", "Dates", "DiskArrays", "Extents", "GDAL", "GeoFormatTypes", "GeoInterface", "GeoInterfaceRecipes", "ImageCore", "Tables"]
@@ -169,6 +179,11 @@ git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860"
 uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
 version = "1.0.2"
 
+[[deps.CommonSolve]]
+git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c"
+uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2"
+version = "0.2.4"
+
 [[deps.CommonSubexpressions]]
 deps = ["MacroTools", "Test"]
 git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7"
@@ -184,7 +199,7 @@ version = "4.5.0"
 [[deps.CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
-version = "1.0.2+0"
+version = "1.0.5+0"
 
 [[deps.CompositionsBase]]
 git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769"
@@ -839,7 +854,7 @@ version = "2.5.2"
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
-version = "1.9.0"
+version = "1.9.2"
 
 [[deps.PooledArrays]]
 deps = ["DataAPI", "Future"]
@@ -887,6 +902,12 @@ git-tree-sha1 = "97aa253e65b784fd13e83774cadc95b38011d734"
 uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
 version = "2.6.0"
 
+[[deps.Quaternions]]
+deps = ["LinearAlgebra", "Random", "RealDot"]
+git-tree-sha1 = "da095158bdc8eaccb7890f9884048555ab771019"
+uuid = "94ee1d12-ae83-5a48-8b1c-48b8ff168ae0"
+version = "0.7.4"
+
 [[deps.QuickHeaps]]
 deps = ["ArrayTools", "DataStructures"]
 git-tree-sha1 = "ff720a9c8356004cc9e3d109cdcb327510345edc"
@@ -901,6 +922,12 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 deps = ["SHA", "Serialization"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
+[[deps.RealDot]]
+deps = ["LinearAlgebra"]
+git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9"
+uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9"
+version = "0.1.0"
+
 [[deps.RecipesBase]]
 deps = ["SnoopPrecompile"]
 git-tree-sha1 = "18c35ed630d7229c5584b945641a73ca83fb5213"
@@ -936,6 +963,12 @@ git-tree-sha1 = "68db32dff12bb6127bac73c209881191bf0efbb7"
 uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
 version = "0.3.0+0"
 
+[[deps.Rotations]]
+deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays"]
+git-tree-sha1 = "54ccb4dbab4b1f69beb255a2c0ca5f65a9c82f08"
+uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc"
+version = "1.5.1"
+
 [[deps.SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
 version = "0.7.0"

runprofile.jl

+#!/usr/bin/env julia
+# A wrapper script to start a Persefone simulation and do a profiling run
+# (https://docs.julialang.org/en/v1/stdlib/Profile/).
+
+using Pkg
+Pkg.activate(".")
+using Persefone
+
+using Profile
+Profile.clear()
+
+@profile simulate()
+
+open("profile_flat.txt", "w") do s
+    Profile.print(IOContext(s, :displaysize=>(300,145)), format=:flat, mincount=10, sortedby=:count)
+end
+
+open("profile_tree.txt", "w") do s
+    Profile.print(IOContext(s, :displaysize=>(300,300)), mincount=10)
+end
+
+