Remove CairoMakie dependency and all code using it temporarily

Project.toml

@@ -7,7 +7,6 @@ version = "0.4.1"
 Agents = "46ada45e-f475-11e8-01d0-f70cc89e6671"
 ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
-CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 DataFramesMeta = "1313f7d8-7da2-5740-9ea0-a2ca25f37964"
 Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"

src/Persefone.jl

@@ -16,7 +16,6 @@ module Persefone
 using
     Agents,
     ArgParse,
-    CairoMakie, #XXX this is a very big dependency :-(
     CSV,
     Dates,
     DataFrames,
@@ -80,8 +79,6 @@ export
     createevent!,
     finalise!,
     outputdata,
-    visualisemap,
-    populationtrends,
     visualiseoutput,
     savemodelobject,
     loadmodelobject
@@ -90,7 +87,7 @@ export
 ## b references something from file a, it must be included later)
 include("core/input.jl")
 include("core/output.jl")
-include("analysis/makieplots.jl")
+#include("analysis/makieplots.jl")
 
 include("world/landscape.jl")
 include("world/weather.jl")

src/core/output.jl

@@ -217,7 +217,7 @@ saving each figure to file.
 """
 function visualiseoutput(model::AgentBasedModel)
     @debug "Visualising output."
-    CairoMakie.activate!() # make sure we're using Cairo
+    #CairoMakie.activate!() # make sure we're using Cairo
     for output in model.dataoutputs
         isnothing(output.plotfunction) && continue
         figure = output.plotfunction(model)

src/nature/ecologicaldata.jl

@@ -9,10 +9,10 @@
 Create output files for each data group collected by the nature model.
 """
 function initecologicaldata(model::AgentBasedModel)
-    newdataoutput!(model, "populations", ["Date", "Species", "Abundance"],
-                   savepopulationdata, @param(nature.popoutfreq), populationtrends)
-    newdataoutput!(model, "individuals", ["Date","ID","X","Y","Species","Sex","Age"],
-                   saveindividualdata, @param(nature.indoutfreq), visualisemap)
+    # newdataoutput!(model, "populations", ["Date", "Species", "Abundance"],
+    #                savepopulationdata, @param(nature.popoutfreq), populationtrends)
+    # newdataoutput!(model, "individuals", ["Date","ID","X","Y","Species","Sex","Age"],
+    #                saveindividualdata, @param(nature.indoutfreq), visualisemap)
 end
 
 """

test/io_tests.jl

@@ -85,13 +85,13 @@ end
     @param(core.enddate) = originalenddate
 end
 
-@testset "Output visualisation" begin
-    model = initialise(TESTPARAMETERS)
-    stepsimulation!(model)
-    @test_logs((:debug, "Visualising output."),
-               min_level=Logging.Debug, match_mode=:any,
-               visualiseoutput(model))
-    @test isfile(joinpath(@param(core.outdir), "individuals.pdf"))
-    @test isfile(joinpath(@param(core.outdir), "populations.pdf"))
-    rm(@param(core.outdir), force=true, recursive=true)
-end
+# @testset "Output visualisation" begin
+#     model = initialise(TESTPARAMETERS)
+#     stepsimulation!(model)
+#     @test_logs((:debug, "Visualising output."),
+#                min_level=Logging.Debug, match_mode=:any,
+#                visualiseoutput(model))
+#     @test isfile(joinpath(@param(core.outdir), "individuals.pdf"))
+#     @test isfile(joinpath(@param(core.outdir), "populations.pdf"))
+#     rm(@param(core.outdir), force=true, recursive=true)
+# end