05_ExtractEnvironment.Rmd

title: "sPlot 3.0 - Environmental Data"
author: "Francesco Maria Sabatini"
date: "2/14/2020"
output: html_document


Timestamp: r date()
Drafted: Francesco Maria Sabatini
Revised:
version: 1.0

This report documents the construction of the header file for sPlot 3.0. It is based on dataset sPlot_3.0.2, received on 24/07/2019 from Stephan Hennekens.

knitr::opts_chunk$set(echo = TRUE)
library(tidyverse)
library(viridis)
library(readr)
library(xlsx)
library(knitr)
library(kableExtra)

## Spatial packages
library(rgdal)
library(sp)
library(sf)
library(rgeos)
library(raster)
library(rworldmap)
#library(elevatr)
#library(rnaturalearth)
#library(dggridR)

#save temporary files
write("TMPDIR = /data/sPlot/users/Francesco/_tmp", file=file.path(Sys.getenv('TMPDIR'), '.Renviron'))
write("R_USER = /data/sPlot/users/Francesco/_tmp", file=file.path(Sys.getenv('R_USER'), '.Renviron'))
rasterOptions(tmpdir="/data/sPlot/users/Francesco/_tmp")

Import header data

load("../_output/header_splot3.0.RData")