Commits · 9f7c6efbd2e755a09567cd74a0b6bd39fdbe443b · ye87zine / Symobio-modeling

Mar 20, 2025
- started cleaning up and reorganizing repo · 9f7c6efb
  ye87zine authored 1 month ago
  
  9f7c6efb
Mar 19, 2025
- Implement glock block CV strategy · c1fa2153
  ye87zine authored 1 month ago
  
  c1fa2153
Mar 04, 2025
- update model + analysis pipeline · fab18e93
  ye87zine authored 1 month ago
  
  fab18e93
Feb 28, 2025
- rf experiments · 298d7d6e
  ye87zine authored 1 month ago
  
  298d7d6e
Feb 20, 2025
- additional model evaluation and analysis · 643e472f
  ye87zine authored 2 months ago
  
  643e472f
Feb 17, 2025
- updated/implemented different msdm approaches · e0cabef3
  ye87zine authored 2 months ago
  
  e0cabef3
Jan 31, 2025
- msdm finally learn species embeddings · a203c88c
  ye87zine authored 2 months ago
  
  a203c88c
Jan 29, 2025
- restructured files, moved forward with results analysis · 1bb49531
  ye87zine authored 2 months ago
  
  1bb49531
Jan 15, 2025
- updated nn part of ssdm pipeline · 60a58262
  ye87zine authored 3 months ago
  
  60a58262
- Merge branch 'alternative-model-evaluation' into 'main' · 5a14bd29
  ye87zine authored 3 months ago
  
  Alternative model evaluation See merge request !2
  5a14bd29
- some changes to modeling pipelines and quick additions for updated report · 2cfd5491
  ye87zine authored 3 months ago
  
  2cfd5491
Jan 10, 2025
- merged latest version of main · 025428c9
  ye87zine authored 3 months ago
  
  Merge branch 'main' into alternative-model-evaluation # Conflicts: # R/03_presence_absence_preparation.R
  025428c9
- Merge branch 'presence-absence-sampling' into 'main' · 0105831c
  ye87zine authored 3 months ago
  
  Presence absence sampling See merge request !1
  0105831c
- improved implementation of absence sampling algorithnm · e3da5ed4
  ye87zine authored 3 months ago
  
  e3da5ed4
Jan 09, 2025
- work on model report · fae69c94
  ye87zine authored 3 months ago
  
  fae69c94
- filtered duplicate occurrences, auto bandwidth in spatial kde · a72dfbf8
  ye87zine authored 3 months ago
  
  a72dfbf8
- some tweaks in presence and absence preparation · 2f676f27
  ye87zine authored 3 months ago
  
  2f676f27
Jan 06, 2025
- updated presence preparation, fine tuned absence sampling · aa163c9d
  ye87zine authored 3 months ago
  
  aa163c9d
Jan 03, 2025
- environmental variable selection · f1914575
  ye87zine authored 3 months ago
  
  f1914575
Dec 19, 2024
- work on reverse niche · e32d220e
  ye87zine authored 4 months ago
  
  e32d220e
Dec 18, 2024
- protoyped kde based absence sampling · c33c0424
  ye87zine authored 4 months ago
  
  c33c0424
Dec 17, 2024
- finalize nested cv · 7868a722
  ye87zine authored 4 months ago
  
  7868a722
Dec 13, 2024
- some progress on nested CV · 62ff20e6
  ye87zine authored 4 months ago
  
  62ff20e6
Dec 12, 2024
- additions to msdm analysis · cbc47e17
  ye87zine authored 4 months ago
  
  cbc47e17
Dec 11, 2024
- implement multi embedding msdms. Enhance reports · c49fa18f
  ye87zine authored 4 months ago
  
  c49fa18f
Dec 05, 2024
- work on performance comparison · ec98b6e9
  ye87zine authored 4 months ago
  
  ec98b6e9
Dec 03, 2024
- implemented phylo and range models · 87dd6af4
  ye87zine authored 4 months ago
  
  87dd6af4
Nov 27, 2024
- some renaming, added phylo script · 6213fe55
  ye87zine authored 4 months ago
  
  6213fe55
- phylo dist calculation · 496eb761
  ye87zine authored 4 months ago
  
  496eb761
Nov 21, 2024
- update dependencies · 56819376
  ye87zine authored 5 months ago
  
  56819376
- implemented multiclass model. Multiple improvements and bugfixes across pipeline · 84db4dad
  ye87zine authored 5 months ago
  
  84db4dad
Nov 14, 2024
- Merge branch 'main' of https://git.idiv.de/ye87zine/symobio-modeling · 1b612f78
  ye87zine authored 5 months ago
  
  1b612f78
- added model performance ranking · 925b1eb1
  ye87zine authored 5 months ago
  
  925b1eb1
- added trait distance calculation · 9e3afb8f
  ye87zine authored 5 months ago
  
  9e3afb8f
Nov 08, 2024
- added msdm modeling + analysis · cce46e6d
  ye87zine authored 5 months ago
  
  cce46e6d
Nov 07, 2024
- revamped ssdm performance analysis · 7c726c39
  ye87zine authored 5 months ago
  
  7c726c39
Nov 06, 2024
- implement cito DNNs for SSDM, restructure files · 11bd13c8
  ye87zine authored 5 months ago
  
  11bd13c8
Oct 28, 2024
- changed bias metric yet again · 0297e6ab
  ye87zine authored 5 months ago
  
  0297e6ab
- Added more species to modeling pipeline, fixed some bugs and made some additions to analysis script · 296d916c
  ye87zine authored 5 months ago
  
  296d916c
Oct 21, 2024
- Merge branch 'main' of https://git.idiv.de/ye87zine/symobio-modeling · 87abe201
  ye87zine authored 6 months ago
  
  initial merge
  87abe201