Added script for runtime profiling

closes #38

.gitignore

 TODO.md
 docs/planning
-*results*/
\ No newline at end of file
+*results*/
+profile*txt
\ No newline at end of file

Makefile

@@ -2,7 +2,7 @@ SHELL = /bin/bash
 .PHONY: run test docs release install
 
 run:
-	# running example simulation
+	# run an example simulation
 	if [ -d "example_results" ]; then rm -r example_results; fi
 	./run.jl -o example_results
 	src/analysis/analyse_nature.R example_results
@@ -19,6 +19,11 @@ docs:
 	sed -i -e "s/\*Last updated:.*/\*Last updated: ${commit}\*/" docs/src/index.md
 	cd docs; julia builddocs.jl
 
+profile:
+	# run and profile an example simulation
+	if [ -d "example_results" ]; then rm -r example_results; fi
+	./runprofile.jl -o example_results
+
 container:
 	echo "Not yet implemented (#43)"
 

README.md

@@ -61,6 +61,7 @@ If you are on Linux or MacOS, you can also use `make`:
 ```
 > make run       # run a simulation with default values
 > make test      # run the test suite
+> make profile   # run and profile a default simulation
 > make docs      # build the documentation
 > make release   # create a release
 ```

docs/src/index.md

@@ -51,8 +51,6 @@ of parameters):
 
 [core]
 configfile = "src/parameters.toml" # location of the configuration file
-landcovermap = "data/landcover_jena.tif" # location of the landcover map
-farmfieldsmap = "data/fields_jena.tif" # location of the field geometry map
 outdir = "results" # location and name of the output folder
 overwrite = "ask" # overwrite the output directory? (true/false/"ask")
 loglevel = "debug" # verbosity level: "debug", "info", "warn"
@@ -62,6 +60,10 @@ seed = 2 # seed value for the RNG (0 -> random value)
 startdate = 2022-01-01
 enddate = 2022-12-31
 
+[world]
+landcovermap = "data/landcover_jena.tif" # location of the landcover map
+farmfieldsmap = "data/fields_jena.tif" # location of the field geometry map
+
 [farm]
 farmmodel = "FieldManager" # which version of the farm model to use (not yet implemented)