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Commit 39662da0 authored by Maria Voigt's avatar Maria Voigt
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changing indir and the name and in the last line indir_path

because indir = outdir, but -i=indir is more consistent
parent 8c03edc4
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...@@ -6,9 +6,9 @@ ...@@ -6,9 +6,9 @@
# here somehow write the prefix depending on what we are testing # here somehow write the prefix depending on what we are testing
JOB_NAME_PREFIX=ppln_ae75m_50_ac JOB_NAME_PREFIX=ppln_ae75m_80
INPUT_PATH='/work/voigtma/ppln_ae75m_50_ac-2017-02-15T14-23-58' INPUT_PATH='/work/voigtma/ppln_ae75m_80-2017-02-18T22-34-53'
NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S) NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S)
OUTPUT_PATH=$INPUT_PATH OUTPUT_PATH=$INPUT_PATH
...@@ -24,7 +24,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" ...@@ -24,7 +24,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
MODEL_JOB_ID_FITTING=$($QSUB \ MODEL_JOB_ID_FITTING=$($QSUB \
-N ${JOB_NAME_PREFIX}_fitting \ -N ${JOB_NAME_PREFIX}_fitting \
$HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model_ac_term.sh \ $HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model.sh \
-i $INPUT_PATH \ -i $INPUT_PATH \
--ESW-aerial 0.075 \ --ESW-aerial 0.075 \
--include-aerial \ --include-aerial \
...@@ -37,5 +37,5 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" ...@@ -37,5 +37,5 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
-hold_jid $MODEL_JOB_ID_FITTING \ -hold_jid $MODEL_JOB_ID_FITTING \
-t 1999:2015 \ -t 1999:2015 \
$HOME/orangutan_density_distribution/src/prediction/submit_abundance_pred.sh \ $HOME/orangutan_density_distribution/src/prediction/submit_abundance_pred.sh \
-i $OUTPUT_PATH ) -i $INPUT_PATH )
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