Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
M
manuscript_code
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Requirements
Code
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Deploy
Releases
Model registry
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
Repository analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Maria Voigt
manuscript_code
Commits
6bf57412
Commit
6bf57412
authored
8 years ago
by
Maria Voigt
Browse files
Options
Downloads
Patches
Plain Diff
changing outdir and submit to ac-model
parent
d842e243
No related branches found
No related tags found
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
src/pipeline/submit_pipeline_model.sh
+5
-4
5 additions, 4 deletions
src/pipeline/submit_pipeline_model.sh
with
5 additions
and
4 deletions
src/pipeline/submit_pipeline_model.sh
+
5
−
4
View file @
6bf57412
...
@@ -6,12 +6,13 @@
...
@@ -6,12 +6,13 @@
# here somehow write the prefix depending on what we are testing
# here somehow write the prefix depending on what we are testing
JOB_NAME_PREFIX
=
ppln_ae75m_50
JOB_NAME_PREFIX
=
ppln_ae75m_50
_ac
INPUT_PATH
=
'/work/voigtma/ppln_ae75m_50-2017-02-
14T16-39-11
'
INPUT_PATH
=
'/work/voigtma/ppln_ae75m_50
_fixing
-2017-02-
28T18-00-52
'
NAME
=
$JOB_NAME_PREFIX
-
$(
date
+%FT%H-%M-%S
)
NAME
=
$JOB_NAME_PREFIX
-
$(
date
+%FT%H-%M-%S
)
OUTPUT_PATH
=
$INPUT_PATH
# FIX THIS
OUTPUT_PATH
=
/work/
$USER
/
$NAME
# qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different)
# qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different)
QSUB
=
"qsub -terse -v OUTPUT_PATH=
$OUTPUT_PATH
-o /work/
$USER
/
$NAME
.log -j y"
QSUB
=
"qsub -terse -v OUTPUT_PATH=
$OUTPUT_PATH
-o /work/
$USER
/
$NAME
.log -j y"
...
@@ -24,7 +25,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
...
@@ -24,7 +25,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
MODEL_JOB_ID_FITTING
=
$(
$QSUB
\
MODEL_JOB_ID_FITTING
=
$(
$QSUB
\
-N
${
JOB_NAME_PREFIX
}
_fitting
\
-N
${
JOB_NAME_PREFIX
}
_fitting
\
$HOME
/orangutan_density_distribution/src/model_fitting/submit_abundance_model.sh
\
$HOME
/orangutan_density_distribution/src/model_fitting/submit_abundance_model
_ac_term
.sh
\
-i
$INPUT_PATH
\
-i
$INPUT_PATH
\
--ESW-aerial
0.075
\
--ESW-aerial
0.075
\
--include-aerial
\
--include-aerial
\
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment