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Commit 6bf57412 authored by Maria Voigt's avatar Maria Voigt
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changing outdir and submit to ac-model

parent d842e243
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...@@ -6,12 +6,13 @@ ...@@ -6,12 +6,13 @@
# here somehow write the prefix depending on what we are testing # here somehow write the prefix depending on what we are testing
JOB_NAME_PREFIX=ppln_ae75m_50 JOB_NAME_PREFIX=ppln_ae75m_50_ac
INPUT_PATH='/work/voigtma/ppln_ae75m_50-2017-02-14T16-39-11' INPUT_PATH='/work/voigtma/ppln_ae75m_50_fixing-2017-02-28T18-00-52'
NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S) NAME=$JOB_NAME_PREFIX-$(date +%FT%H-%M-%S)
OUTPUT_PATH=$INPUT_PATH # FIX THIS
OUTPUT_PATH=/work/$USER/$NAME
# qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different) # qsub -v means that OUTPUT_PATH goes into environment (normally export, but with qsub different)
QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
...@@ -24,7 +25,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y" ...@@ -24,7 +25,7 @@ QSUB="qsub -terse -v OUTPUT_PATH=$OUTPUT_PATH -o /work/$USER/$NAME.log -j y"
MODEL_JOB_ID_FITTING=$($QSUB \ MODEL_JOB_ID_FITTING=$($QSUB \
-N ${JOB_NAME_PREFIX}_fitting \ -N ${JOB_NAME_PREFIX}_fitting \
$HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model.sh \ $HOME/orangutan_density_distribution/src/model_fitting/submit_abundance_model_ac_term.sh \
-i $INPUT_PATH \ -i $INPUT_PATH \
--ESW-aerial 0.075 \ --ESW-aerial 0.075 \
--include-aerial \ --include-aerial \
......
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