minor fixes

01b_MesobromionCluster.R

@@ -18,7 +18,8 @@ require(doParallel)
 source("99_HIDDEN_functions.R")
 
 
-Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY.bootstr", max.inter.t, chunkn, chunk.i, nperm=199){
+Mesobromion <- function(species.path, traits.path, output, myfunction="get.corXY.bootstrap
+", max.inter.t, chunkn, chunk.i, nperm=199){
 
   myfunction <- get(myfunction)
   ## calculate corr between species composition matrix and traits

submit_01b.sh

@@ -22,11 +22,11 @@ output=/data/splot/HIDDEN/output/HIDDEN
 
 Rscript \
     cli_01b.r \
-    --max.inter.t 3 \
+    --max.inter.t 2 \
     --chunk.i $SGE_TASK_ID \
-    --chunkn 399 \
-    --nperm 199 \
+    --chunkn 300 \
+    --nperm 999 \
     /data/splot/HIDDEN/species.out.10perc.txt \
     /data/splot/HIDDEN/traits.out.10perc.txt \
     "$output" \
-    "get.corXY"
+    "get.corXY.bootstrap"